| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0995 |
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| Symbol | |
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| ID | 4278369 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1163942 |
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| End bp | 1166038 |
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| Gene Length | 2097 bp |
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| Protein Length | 698 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638133763 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_749686 |
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| Protein GI | 114562173 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0673762 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAATCCAA TTGTAAAGAG TTTTGAGTAT GGTCAACATA CAGTCACCTT AGAAACAGGT
GTTATTGCAC GTCAAGCTGA TGCTGCAGTT TTAGCAAGCA TGGGCGATAC CACAGTATTA
GTTACTGTAG TTGGTAAAAA AGTAGCGGAT TTAAGCCGTG ACTTCTTCCC GCTAACTGTT
AACTATCAAG AAAAAACCTA TGCTGCAGGT AAAATACCTG GTGGTTTCTT CAAGCGTGAA
GGTCGTCCAT CAGAAGATGA AACTCTGATT GCGCGTCTTA TTGACCGTCC TATTCGTCCT
TTATTCCCTA ACGGTTTTAA AAACGAAGTT CAAGTTATCA TCACTGTGGT TTCTGTTGAT
CCACAAATCG AGCCAGATAT TGTTTCGATG ATTGGTACCT CAGCAGCGTT AGCTATTTCT
GGTATTCCTT TCAGTGGCCC ACTAGGTGCG GCGCGTGTTG GTTATATCAA CGATGAATAT
GTACTTAACC CAACGGTTGA TCAGCTTGCA ACAAGTTCAC TAAACTTAGT TGTTGCTGGT
ACTAAGGCTG CTGTACTTAT GGTTGAATCT GAAGCTAAAG CGCTTGCAGA AGAAATCATG
TTAGGTGCTG TAACTTACGG CCATGATCAA CAACAAGTTG TTGTTGATGC TATTGCTGAG
TTCAAAGCAG AAGCTGGCAA ACCAACATGG GATTGGACTG CACCAGTTCA AGATCAGGCA
TTAGTAGCTA AAATCAAAGA GCTTGCAGAA GCTGGCATGA CAGAAGCTTA CCAAATTGAA
GTTAAGCAAG ACCGTTATGT ACAAGTCGGT ATTGTTAAAG CTGCCGCGAA AGCTGCATTA
GTTGCAGAGA ATCCAGATGT TGATACTCGT GAAGTAGACA ACTTACTTGG TAGTTTAGAG
AAAAGCGTTG TACGTGGCCG TATTATCAGT GGTAAGCCAC GTATCGATGG TCGTGAACCA
GATATGATCC GCGCGTTAAG TGTTTTAGCG GGTGTACTTC CACGTACTCA CGGTAGTTCA
TTATTTACTC GAGGTGAAAC TCAAGCATTA GTTACCTGTA CATTAGGTAC TGAACGTGAT
GCTCAGAAAA TTGATAGCAT CATGGGCGAA CGTACTAATC GCTTTATGCT TCATTATAAC
TTCCCTCCGT ATTCTGTTGG TGAAACAGGT ATGGTTGGTT CACCTAAGCG TCGTGAAATT
GGTCATGGTA AGTTAGCATG GCGCGGTATG AATGCCGTTA TGCCTTCTGC TGAAGAATTC
CCATACAGCA TTCGTGTTGT ATCTGAGATT ACTGAATCTA ACGGTTCAAG CTCTATGGCT
TCAGTATGTG GTACTTCATT AGCATTAATG GATGCCGGTG TACCGATTAA AACTTCAGTT
GCTGGTATTG CAATGGGTCT AGTTAAAGAA GGCGACGATT TCGTTGTACT TTCTGACATC
TTAGGTGATG AAGATCACTT AGGCGATATG GACTTTAAAG TAGCTGGTAC TCGTGATGGT
ATTACTGCTC TGCAGATGGA TATCAAGATT GAAGGTATCA CTAAAGAGAT CATGGATATT
GCACTGCAAC AGGCTTATGG TGCACGTGTT CATATCCTAA ACGTGATGGA CCAAGCTATT
GGCACACATC GTGGCGATAT CTCTGCTCAT GCTCCACGTA TCACTACCAT CAAGATTAAC
CCTGAGAAGA TCCGTGATGT TATTGGTAAA GGCGGTGCGG TAATTCGTGC GCTAACCGAA
GAAACGGGTA CTACGATTGA GCTTGATGAC AATGGTACTG TGAAGATTGC CTCTTCAAAC
GGTGAAGCAA CTAAAGAAGC TATCCGTCGT ATTGAAGAAA TTACTGCTGA AGTTGAAGTG
GGTCGTATCT ACAACGGTAA GGTTATTCGT ATCGTTGATT TCGGCGCATT CGTTAACATT
CTTCCTGGTA AAGACGGTTT AGTACACATT TCACAAATCA GTGATGAACG TGTTGCTAAC
GTGTCAGATC ATTTAGAAAT GAACCAAGAA GTAGCTGTTA AAGTTATGGA AGTGGATCGT
CAAGGTCGTG TAAGACTATC AATTAAAGAA GCTCAAGCGA AAGAAACTGC TGAGTAA
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| Protein sequence | MNPIVKSFEY GQHTVTLETG VIARQADAAV LASMGDTTVL VTVVGKKVAD LSRDFFPLTV
NYQEKTYAAG KIPGGFFKRE GRPSEDETLI ARLIDRPIRP LFPNGFKNEV QVIITVVSVD
PQIEPDIVSM IGTSAALAIS GIPFSGPLGA ARVGYINDEY VLNPTVDQLA TSSLNLVVAG
TKAAVLMVES EAKALAEEIM LGAVTYGHDQ QQVVVDAIAE FKAEAGKPTW DWTAPVQDQA
LVAKIKELAE AGMTEAYQIE VKQDRYVQVG IVKAAAKAAL VAENPDVDTR EVDNLLGSLE
KSVVRGRIIS GKPRIDGREP DMIRALSVLA GVLPRTHGSS LFTRGETQAL VTCTLGTERD
AQKIDSIMGE RTNRFMLHYN FPPYSVGETG MVGSPKRREI GHGKLAWRGM NAVMPSAEEF
PYSIRVVSEI TESNGSSSMA SVCGTSLALM DAGVPIKTSV AGIAMGLVKE GDDFVVLSDI
LGDEDHLGDM DFKVAGTRDG ITALQMDIKI EGITKEIMDI ALQQAYGARV HILNVMDQAI
GTHRGDISAH APRITTIKIN PEKIRDVIGK GGAVIRALTE ETGTTIELDD NGTVKIASSN
GEATKEAIRR IEEITAEVEV GRIYNGKVIR IVDFGAFVNI LPGKDGLVHI SQISDERVAN
VSDHLEMNQE VAVKVMEVDR QGRVRLSIKE AQAKETAE
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