Gene Sfri_0982 details

Gene Information

• Locus tag: Sfri_0982
• Symbol: rrmJ
• ID: 4278199
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 1147226
• End bp: 1147855
• Gene Length: 630 bp
• Protein Length: 209 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 638133748
• Product: 23S rRNA methyltransferase J
• Protein accession: YP_749673
• Protein GI: 114562160
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0293] 23S rRNA methylase
• TIGRFAM ID: [TIGR00438] cell division protein FtsJ

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.0000000194076
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAACAA AAAAACGTAC GGCGAGCTCA ACTCGCTGGA TGCAAGAACA CTTTGATGAT 
CACTATGTGA AATTAGCCCA GAAACGTGGC TTACGTTCAC GAGCAGCATT CAAGTTAGAA 
GAGATCCAAG AAAAAGATCA CTTAATAAAA CAGGGGATGA CAGTAGTTGA CTTGGGGGCA 
GCTCCGGGTG GTTGGTCACA AGTGGCTGCT AAACTTACTG GCGACAAAGG TAAAGTGATT 
GCTTGTGACA TTTTACCGAT GGATCCAATT GTTGGCGTTG ATTTTCTTCA AGGTGATTTT 
AGAGAGGATA AAGTGCTGCA GGCATTGCTT GAGCGAGTAG GTCAAGATAA AGTGGATGTG 
GTACTATCAG ATATGGCTCC GAACATGAGT GGTTCGGGTG CTGTTGATCA GCCAAGGGCT 
ATGTATTTAG TTGAATTAGC GCTAGATATG TGTCACCAAG TGTTGACGCC TAACGGCTGT 
TTTGCTGTTA AAGTCTTTCA GGGGGAGGGC TTTGACGACT ACATAAAAAC AGTCAAACAG 
GCATTCAAAG TAGTAAAAAC CCGTAAACCA GACTCCTCTA GAGCGCGCTC TCGAGAAGTC 
TATCTAGTGG CGACTGGTTA CAAGTTGTAG 

 

Protein sequence

MTTKKRTASS TRWMQEHFDD HYVKLAQKRG LRSRAAFKLE EIQEKDHLIK QGMTVVDLGA 
APGGWSQVAA KLTGDKGKVI ACDILPMDPI VGVDFLQGDF REDKVLQALL ERVGQDKVDV 
VLSDMAPNMS GSGAVDQPRA MYLVELALDM CHQVLTPNGC FAVKVFQGEG FDDYIKTVKQ 
AFKVVKTRKP DSSRARSREV YLVATGYKL