Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0979 |
Symbol | secD |
ID | 4278196 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1144029 |
End bp | 1145840 |
Gene Length | 1812 bp |
Protein Length | 603 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638133745 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_749670 |
Protein GI | 114562157 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.696029 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAATCAA AATCGAATAC CAAACCGTTA AATCAATATG CTCAGTGGAA ATACTGGCTA TTAATTTGCA CACTAATCAT CTTATTTATG AGTGCATTGC CATCTTGGTA TGGTGAAGAT CCTGCCGTAC AACTTGCCGT TAAACCGACC CAATCATTAA CAGTGGAACA AATCCACCAT GTGTTACAAC AAGCGGGCAT AAACAGTAAG CGTATCGAGC AGCAACAAGA TAATTTACTT GTGGTGTTAG ATGATCCCGA TATGCAAACC CAAGCTAAAA AGACCTTAGC ACAACAGTTT GAACATCAGG CTCAAGTGAC CTTAGCGTTA GCTCCAGCGG CCCCAGATTG GTTATTAAAT TTAGGCGTTA AACCGATTAA ACTTGGTTTA GATTTACGCG GTGGAGTGCA GTTTCTACTG GATGTGGATC TTGATTTAGT GTTTCAAAAC CAAGCCGTAT TAGTGAGTGA TGCTGTTAAG CAATTTGTCA GAGAGCAGCA TATCAGCGGT GTAATGGTGC GTTTTGGCAC TGGAGCGGAA CTGACGGTTA ACAGCGCCAG TGATGATGCT CGTGGTCAAA TAAGACAATT TATTGGTCAG CAGTACCCTC AATGGCAAGT CACAGGCCAT CAACAAACAT TGAGTATCAA TCTTTCCCAA AGTGAACAGC TCAAATTAAC CAACTTAACT GTACAGCAAA ACTTGCAAAT TATGCGCAGC CGTATTGAAG AACTTGGTAT TACCGAAGCG CTAGTTCAGC GTCAAGGAGA GAACCGGATT AGGATTGAGT TACCAGGAGT GCAAGATCCT GCCACCGCTA AAAATGTTAT CGGTGCAACC GCTAGTTTGG CATTTTATCC AGTGGTGCAA GCTGACTCTC TTTATGCTGT TGTGATGAAT GATGAGCAGA ATAAGCCTGT TTATGTGTCA AAAAAACCAG TACTTGGTGG CGATCACATT ATTGATGCTC GAGCCACTAC TGGCGATTTT GGTATGGCGA AAGTCAATAT CAGTCTTGAT GCGGCAGGTG GCAAGTTAAT GTCAGATTTT TCACGCGATA ATATCGGTAA ACCTATGGCG ACTGCTTATA GCGAATACAG CAGAGATCAG CAAGGTAAAG CCAAGCAAAC CACTAAAATT ATTAGCGTTG CAACCATTCA GAGTCAACTC GGTAACCGCT TTGAAATCAC TGGAGCTGGC AGCCATCAAG AAGCGCAGCA ATTAGCTTTG TTATTAAGAG CTGGCTCTAT GACTGCACCA GTGACTATTG TTGAAGAACG CACTATTGGA CCTAGTTTAG GGGCCGAGAA TATTGTTAAT GGTTTTGCTG CGCTCGCTTT AGGTTTGTCG GCAACATTAC TGTTTATGGC TTGTTGGTAT CGCCGTTTAG GCTGGGTCGC TAATGTGGCA TTAATCGCCA ACTTGGTCAT GTTATTTGGA TTGTTAGCAC TCATTCCTGG TGCTGTATTG ACCTTGCCTG GTATTGCGGG GTTAGTGCTT ACTGTCGGTA TGGCAGTCGA TACTAACGTA CTTATATTTG AACGGATAAA AGAAAAGCTT GCAGAAGGTC GTAGCTTTGC CAGTGCGATT GATGTGGGAT TTGATAGTGC ATTTTCAACT ATTTTTGATG CTAACTTCAC CACTATGATT ACTGCCGTGG TGTTATTTTC AATTGGTAAT GGTCCTATTC AAGGCTTCGC GTTGACCTTA GGTTTAGGAT TATTAACCAG TATGTTTACT GGTATTTTTG CTTCGCGTGC ATTAATCAAC TTAGTTTATG GCCGTGACAC TCGTCGCGCC ATTAAGGTGT AA
|
Protein sequence | MKSKSNTKPL NQYAQWKYWL LICTLIILFM SALPSWYGED PAVQLAVKPT QSLTVEQIHH VLQQAGINSK RIEQQQDNLL VVLDDPDMQT QAKKTLAQQF EHQAQVTLAL APAAPDWLLN LGVKPIKLGL DLRGGVQFLL DVDLDLVFQN QAVLVSDAVK QFVREQHISG VMVRFGTGAE LTVNSASDDA RGQIRQFIGQ QYPQWQVTGH QQTLSINLSQ SEQLKLTNLT VQQNLQIMRS RIEELGITEA LVQRQGENRI RIELPGVQDP ATAKNVIGAT ASLAFYPVVQ ADSLYAVVMN DEQNKPVYVS KKPVLGGDHI IDARATTGDF GMAKVNISLD AAGGKLMSDF SRDNIGKPMA TAYSEYSRDQ QGKAKQTTKI ISVATIQSQL GNRFEITGAG SHQEAQQLAL LLRAGSMTAP VTIVEERTIG PSLGAENIVN GFAALALGLS ATLLFMACWY RRLGWVANVA LIANLVMLFG LLALIPGAVL TLPGIAGLVL TVGMAVDTNV LIFERIKEKL AEGRSFASAI DVGFDSAFST IFDANFTTMI TAVVLFSIGN GPIQGFALTL GLGLLTSMFT GIFASRALIN LVYGRDTRRA IKV
|
| |