Gene Sfri_0953 details

Gene Information

• Locus tag: Sfri_0953
• ID: 4277681
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 1114039
• End bp: 1114647
• Gene Length: 609 bp
• Protein Length: 202 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 638133719
• Product: Na(+)-translocating NADH-quinone reductase subunit E
• Protein accession: YP_749644
• Protein GI: 114562131
• COG category: [C] Energy production and conversion
• COG ID: [COG2209] Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE
• TIGRFAM ID: [TIGR01940] NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.0087764
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAACATT ATATTAGTTT ATTAATTCGT TCAGTTTTCA TTGAAAACAT GGCACTCGCG 
TTCTTCTTAG GTATGTGTAC TTTCTTAGCG GTTTCGAAGA AAGTCACTAC TGCGATGGGC 
CTTGGTGTTG CAGTTATCGT GGTACTGGCT ATTTCGGTTC CTGCTAACCA AATTATTTAT 
CAAGGTTTAT TGGCTCCAGG CGCATTAGCT TGGGCTGGTT TCCCTGATGC TGATTTGAGC 
TTCTTGAAGT TCATCACCTT TATCGGTGTG ATTGCAGCAC TTGTACAAAT TTTGGAAATG 
GCTTTAGACA AGTATTTTCC GCCTTTGTAC AACGCGTTAG GTATTTTCTT ACCTTTGATT 
ACCGTGAACT GTGCAATTTT CGGTGCAGTA TCTTTCATGG TTGAGCGTGA TTACAACTTA 
GGCGAGAGCG TAGTATTTGG TATTGGCTCT GGCATTGGTT GGGCGTTAGC AATTGTATTG 
CTAGCCGGTA TCCGCGAAAA GATGAAATAT TCTGACGTGC CAAATGGCTT ACGTGGCTTA 
GGTATTACCT TCGTTTCAGC AGGTCTTATG GCTCTAGGTT TCATGTCATT CTCAGGTGTT 
TCTCTTTAA 

 

Protein sequence

MEHYISLLIR SVFIENMALA FFLGMCTFLA VSKKVTTAMG LGVAVIVVLA ISVPANQIIY 
QGLLAPGALA WAGFPDADLS FLKFITFIGV IAALVQILEM ALDKYFPPLY NALGIFLPLI 
TVNCAIFGAV SFMVERDYNL GESVVFGIGS GIGWALAIVL LAGIREKMKY SDVPNGLRGL 
GITFVSAGLM ALGFMSFSGV SL