Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0948 |
Symbol | |
ID | 4277676 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1107557 |
End bp | 1109632 |
Gene Length | 2076 bp |
Protein Length | 691 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638133714 |
Product | TonB-dependent receptor domain-containing protein |
Protein accession | YP_749639 |
Protein GI | 114562126 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4772] Outer membrane receptor for Fe3+-dicitrate |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.915378 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTAACC ACCCATTTAG CCTGTCAGTG ATAGCAGCCG CAGTGCTTTA TGTTTGCCAT TCTACCAATG CCGTTGCAGA AACGGTGACC GAGTCTATTG ATAACCTTAA TAATCAACTC GATTTGCAAC AGTCATCGAT AAGCCAATTT CATTATCGCC AAAGTGATAT AGCATTAGGA TTGACCGGCG CGACAGTGTT ACCTACCGGA CCAAATCAAG ATATTACTAT CACACATGCT GGCGCCACTG ACGGTGTAGC CATTTTACAG GATGGTATTT TCTTTTCTCC TGCGCCTTAT TCTGGACAAC ATTTAGTGTT GCAACCCAAT TTAATGCACC AGCAAAAAGT GTCTTTTTCG AGCATGACCA GTGTGACTGA AAGTTCACAA GCGGCTTTTG GTAAGCTTGA CTATCAGTCG GTACAAATTA GTCCGCAAAA ATATGCAACC GATGTCAATG TTGAAGGCAG TGACAATAAT GCCATCAATG GTGGGGCTGT GCTGAGTGGT ACTTCGAAGC AAAATGGCAT GTTACTGGCA GTAGATTATC AATCTGCATC TGACGATGTG GGTTATCGCG TCGCCCGAGA TGCAGATAGT ACACAGAAAG ATATTTTGTT CAAAATTGCT GCCGATAGTT TACCCGGAGC ACGTAACCAA CAAACGACAG AATTTAGTTA TCAGTACTCA TCACAAGAAG CTGATCGCGG AGCGTTGGGG TTAACCAGTG TTGATTTTTC AGTAAATCCG ACTCAATTAT ATTCAGCAGC TAGCACCGAC AATACTGAAG GCGAACGTCA ACGTTACGTG TTAGCACATC AGCTAATCAT GTCATCTACT TCAACGATGG CTACCGACTT TTATTATCAA ACCTATTCAC AACAATCTCA AGAGATGCAG TTTGTTGATG GTGAGCAAGT TAATAATGCG TTGCTGTCTC GTATTGCTAT GTTTGAAACA ACACCCACCA CCGATGGGAT GAACTTAGGA GCGTTAACAC AAAATAACGA TTTCTCTGGG TTTGGTATGC AAACAAAAGG TGTCAGCATG TATGGTCAGC ATCAGGTGAC TTATAGTGCG CGCTACCATA CAGATAAAGC TGAAATGCGT TTAGGTCAAC GTGAGTGGTC GTGGAACAAT GATTTATCAT TGACGCCGAC AACTGATGAT GAATATGCAC TGACGTATAC TGACGATGCC TCGGCATTTT CATCAGCGGT AGATACTAAA TTAAATTATG GTCAGTGGTC TATCAACCTC GGTTTAGGTT ATGAGCATGT CAGTGTTTCT CGTGAGCTTG GTGATGTAAA TACGAGCCTT AATGCTGCAG ACTTTTCTGA TGATGGCTGG TCGCCTTCTA TTGAAGTGGC TTACCAGAGT GGGCCGTGGT TAGCCGCGTT ACAAGCTAAA CAAGCTTGGA CAGCCGCTTC AGCCGGTAAT ATTGAACAAA CAGCGCAAGA AGCGTTGCAA TATCAATTAG CATTAAGCTA CCAACAAGAT GCTTTATCGA TTGCCATGAC GGCTTATATG CATGATTACG ATAGCCAACA TGTGAGCTGT ATGCAGGGCA TGATATGTGA TTATGAACAA ATATCATTAC AAGAGAATAT TAAGGATGTT TCTGTTGTCG GCGCAGATTT GAGCATAGCG TATGGACTAA CATTTGATCA CTTTTCAATT CCCTTCAAAG CCAAATACCA ATATACCCAA GCTGAAACAG ACAATGCTAA TTGCAATGAA TTGATGGCAT GTTTTGCCGC TGATAGCCAA TTACCTTGGG TACCAGAACA ACAATTGACG TTAAGTTCTG GGGTTGTTTA CGGCAATATG TCCATTATGG CGCAAGTTTT GTATCAATCG GAGTTAGGTT ATCAAGGTGG GTTTACCAAT GAGCGCGCTA TCGATAGTCA ATGGAAGGTT GATATCGCCG CTACTTACCG TTTGACCGAG CAGCACGAGT TGTATGTTCG TGTTGAGAAT TTGTTAGACG AAGAGTTAGT GGCAAATCGC ACTGCAATGG GATTCCAAGG ACAGTCTGAA ATGACCACAT ACTTTGGTTA TCAAGGCCAT TTCTAG
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Protein sequence | MSNHPFSLSV IAAAVLYVCH STNAVAETVT ESIDNLNNQL DLQQSSISQF HYRQSDIALG LTGATVLPTG PNQDITITHA GATDGVAILQ DGIFFSPAPY SGQHLVLQPN LMHQQKVSFS SMTSVTESSQ AAFGKLDYQS VQISPQKYAT DVNVEGSDNN AINGGAVLSG TSKQNGMLLA VDYQSASDDV GYRVARDADS TQKDILFKIA ADSLPGARNQ QTTEFSYQYS SQEADRGALG LTSVDFSVNP TQLYSAASTD NTEGERQRYV LAHQLIMSST STMATDFYYQ TYSQQSQEMQ FVDGEQVNNA LLSRIAMFET TPTTDGMNLG ALTQNNDFSG FGMQTKGVSM YGQHQVTYSA RYHTDKAEMR LGQREWSWNN DLSLTPTTDD EYALTYTDDA SAFSSAVDTK LNYGQWSINL GLGYEHVSVS RELGDVNTSL NAADFSDDGW SPSIEVAYQS GPWLAALQAK QAWTAASAGN IEQTAQEALQ YQLALSYQQD ALSIAMTAYM HDYDSQHVSC MQGMICDYEQ ISLQENIKDV SVVGADLSIA YGLTFDHFSI PFKAKYQYTQ AETDNANCNE LMACFAADSQ LPWVPEQQLT LSSGVVYGNM SIMAQVLYQS ELGYQGGFTN ERAIDSQWKV DIAATYRLTE QHELYVRVEN LLDEELVANR TAMGFQGQSE MTTYFGYQGH F
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