Gene Sfri_0948 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0948 
Symbol 
ID4277676 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp1107557 
End bp1109632 
Gene Length2076 bp 
Protein Length691 aa 
Translation table11 
GC content43% 
IMG OID638133714 
ProductTonB-dependent receptor domain-containing protein 
Protein accessionYP_749639 
Protein GI114562126 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4772] Outer membrane receptor for Fe3+-dicitrate 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.915378 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTAACC ACCCATTTAG CCTGTCAGTG ATAGCAGCCG CAGTGCTTTA TGTTTGCCAT 
TCTACCAATG CCGTTGCAGA AACGGTGACC GAGTCTATTG ATAACCTTAA TAATCAACTC
GATTTGCAAC AGTCATCGAT AAGCCAATTT CATTATCGCC AAAGTGATAT AGCATTAGGA
TTGACCGGCG CGACAGTGTT ACCTACCGGA CCAAATCAAG ATATTACTAT CACACATGCT
GGCGCCACTG ACGGTGTAGC CATTTTACAG GATGGTATTT TCTTTTCTCC TGCGCCTTAT
TCTGGACAAC ATTTAGTGTT GCAACCCAAT TTAATGCACC AGCAAAAAGT GTCTTTTTCG
AGCATGACCA GTGTGACTGA AAGTTCACAA GCGGCTTTTG GTAAGCTTGA CTATCAGTCG
GTACAAATTA GTCCGCAAAA ATATGCAACC GATGTCAATG TTGAAGGCAG TGACAATAAT
GCCATCAATG GTGGGGCTGT GCTGAGTGGT ACTTCGAAGC AAAATGGCAT GTTACTGGCA
GTAGATTATC AATCTGCATC TGACGATGTG GGTTATCGCG TCGCCCGAGA TGCAGATAGT
ACACAGAAAG ATATTTTGTT CAAAATTGCT GCCGATAGTT TACCCGGAGC ACGTAACCAA
CAAACGACAG AATTTAGTTA TCAGTACTCA TCACAAGAAG CTGATCGCGG AGCGTTGGGG
TTAACCAGTG TTGATTTTTC AGTAAATCCG ACTCAATTAT ATTCAGCAGC TAGCACCGAC
AATACTGAAG GCGAACGTCA ACGTTACGTG TTAGCACATC AGCTAATCAT GTCATCTACT
TCAACGATGG CTACCGACTT TTATTATCAA ACCTATTCAC AACAATCTCA AGAGATGCAG
TTTGTTGATG GTGAGCAAGT TAATAATGCG TTGCTGTCTC GTATTGCTAT GTTTGAAACA
ACACCCACCA CCGATGGGAT GAACTTAGGA GCGTTAACAC AAAATAACGA TTTCTCTGGG
TTTGGTATGC AAACAAAAGG TGTCAGCATG TATGGTCAGC ATCAGGTGAC TTATAGTGCG
CGCTACCATA CAGATAAAGC TGAAATGCGT TTAGGTCAAC GTGAGTGGTC GTGGAACAAT
GATTTATCAT TGACGCCGAC AACTGATGAT GAATATGCAC TGACGTATAC TGACGATGCC
TCGGCATTTT CATCAGCGGT AGATACTAAA TTAAATTATG GTCAGTGGTC TATCAACCTC
GGTTTAGGTT ATGAGCATGT CAGTGTTTCT CGTGAGCTTG GTGATGTAAA TACGAGCCTT
AATGCTGCAG ACTTTTCTGA TGATGGCTGG TCGCCTTCTA TTGAAGTGGC TTACCAGAGT
GGGCCGTGGT TAGCCGCGTT ACAAGCTAAA CAAGCTTGGA CAGCCGCTTC AGCCGGTAAT
ATTGAACAAA CAGCGCAAGA AGCGTTGCAA TATCAATTAG CATTAAGCTA CCAACAAGAT
GCTTTATCGA TTGCCATGAC GGCTTATATG CATGATTACG ATAGCCAACA TGTGAGCTGT
ATGCAGGGCA TGATATGTGA TTATGAACAA ATATCATTAC AAGAGAATAT TAAGGATGTT
TCTGTTGTCG GCGCAGATTT GAGCATAGCG TATGGACTAA CATTTGATCA CTTTTCAATT
CCCTTCAAAG CCAAATACCA ATATACCCAA GCTGAAACAG ACAATGCTAA TTGCAATGAA
TTGATGGCAT GTTTTGCCGC TGATAGCCAA TTACCTTGGG TACCAGAACA ACAATTGACG
TTAAGTTCTG GGGTTGTTTA CGGCAATATG TCCATTATGG CGCAAGTTTT GTATCAATCG
GAGTTAGGTT ATCAAGGTGG GTTTACCAAT GAGCGCGCTA TCGATAGTCA ATGGAAGGTT
GATATCGCCG CTACTTACCG TTTGACCGAG CAGCACGAGT TGTATGTTCG TGTTGAGAAT
TTGTTAGACG AAGAGTTAGT GGCAAATCGC ACTGCAATGG GATTCCAAGG ACAGTCTGAA
ATGACCACAT ACTTTGGTTA TCAAGGCCAT TTCTAG
 
Protein sequence
MSNHPFSLSV IAAAVLYVCH STNAVAETVT ESIDNLNNQL DLQQSSISQF HYRQSDIALG 
LTGATVLPTG PNQDITITHA GATDGVAILQ DGIFFSPAPY SGQHLVLQPN LMHQQKVSFS
SMTSVTESSQ AAFGKLDYQS VQISPQKYAT DVNVEGSDNN AINGGAVLSG TSKQNGMLLA
VDYQSASDDV GYRVARDADS TQKDILFKIA ADSLPGARNQ QTTEFSYQYS SQEADRGALG
LTSVDFSVNP TQLYSAASTD NTEGERQRYV LAHQLIMSST STMATDFYYQ TYSQQSQEMQ
FVDGEQVNNA LLSRIAMFET TPTTDGMNLG ALTQNNDFSG FGMQTKGVSM YGQHQVTYSA
RYHTDKAEMR LGQREWSWNN DLSLTPTTDD EYALTYTDDA SAFSSAVDTK LNYGQWSINL
GLGYEHVSVS RELGDVNTSL NAADFSDDGW SPSIEVAYQS GPWLAALQAK QAWTAASAGN
IEQTAQEALQ YQLALSYQQD ALSIAMTAYM HDYDSQHVSC MQGMICDYEQ ISLQENIKDV
SVVGADLSIA YGLTFDHFSI PFKAKYQYTQ AETDNANCNE LMACFAADSQ LPWVPEQQLT
LSSGVVYGNM SIMAQVLYQS ELGYQGGFTN ERAIDSQWKV DIAATYRLTE QHELYVRVEN
LLDEELVANR TAMGFQGQSE MTTYFGYQGH F