Gene Sfri_0921 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0921 
Symbol 
ID4277334 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp1084130 
End bp1084912 
Gene Length783 bp 
Protein Length260 aa 
Translation table11 
GC content40% 
IMG OID638133687 
Productextracellular solute-binding protein 
Protein accessionYP_749612 
Protein GI114562099 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACGCT TGCCTTTAAC GCTTTATATC ATCTTCCTCA GCATTTGCTT TGCACTCACG 
CCAACGGGCG ATCTATTTGC AAAAGACCAA TCGCAAGTTC GATTTATCAC CCATCCATTA
CCCCCATTTA GTTACATTGA TAATGATCTT TTAAGCGGTT TTTCTATCGA TATTGTTCAA
GCGATGATGC TACATACCCA GCAAACAGCC AACATTGAAA TGTACCCCTT TAATAGAGCT
TTTCAGTTAT TAAAGTCGCA ACCCAATACT GCGTTATTTG TCATTGCTAA AAGGCCGGAA
AGAGAAGTAA ACATGAAATG GGTAGGCCCC ATTATTAGTA GCGGAGTGTA TTTTTACCAA
AAGCGTAATT CCGGACTATC ACTAGCAGAT TTAGAAGACT TAAAACGAGT CCGAAATGTC
GGCGTAGTGC TTGGTAATGC TGACCATACC TATTTGGACT CCCAAGGATT CACTAACCTC
AGTACTGACA AATCCCAATT ACAATCGCTC AAAATGCTCA GTTACGGCAG AGTTGATGTT
GCGCCGATGA GCGAGCTAGT AATGCCTTTT TTGGCAAAAG CAGCCGATAT CGATATCAAC
TCAATAGAAC GTACTCCTAT TAAGTTGTAC GACTCTACCT TATATATTGC GTTTTCAAAC
GACACCACTG ATGAGGCGGT TGCACTATGG CAACAAGCAT TTGATGAGTT AAAATCATCA
GGGATGTACC AGACCATTTA TCAAGATTAT TTTCCAACTG ATACCAATAT TGCCAAGCGA
TAA
 
Protein sequence
MKRLPLTLYI IFLSICFALT PTGDLFAKDQ SQVRFITHPL PPFSYIDNDL LSGFSIDIVQ 
AMMLHTQQTA NIEMYPFNRA FQLLKSQPNT ALFVIAKRPE REVNMKWVGP IISSGVYFYQ
KRNSGLSLAD LEDLKRVRNV GVVLGNADHT YLDSQGFTNL STDKSQLQSL KMLSYGRVDV
APMSELVMPF LAKAADIDIN SIERTPIKLY DSTLYIAFSN DTTDEAVALW QQAFDELKSS
GMYQTIYQDY FPTDTNIAKR