| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0919 |
|---|
| Symbol | |
|---|
| ID | 4278623 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 1082298 |
|---|
| End bp | 1083221 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638133685 |
|---|
| Product | transcriptional regulator, LysR family protein |
|---|
| Protein accession | YP_749610 |
|---|
| Protein GI | 114562097 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAT TTGAAGCCAT GAGACGGTTT GTTCATGTCG CGCAAACCGG TAGCTTTACT
CAGGCTGCAG CGGCATTGCA CTTACCTAAA TCGAGTATTT CAACTGCCGT CGAGTCATTA
GAGCAACTAT TAGGCACTCG GCTTTTTCAG CGCAGTACCC GGCGGGTGAC GCTAACCCAT
GACGGGGCTA TCTATTTGGC TCAATGTCGA CAAATATTGC ACGATATAGA TGCTTTAGAA
AGCCAGTTTC AGCATGAAAA TGACAGCGTT AGAGGCGTCA TAAAAGTCGA TATGCCGAGT
CGTTTTGCCA ATAAAACCGT ACTGCCTCGA CTAAGCGAAT GGTGTGAGCG TTATCCCCAC
GTCAATGTTG TCATCAGCAG TACGGATTAT CATATCGATC CAATAAAGTC TGGGGTTGAT
TGCCTGATCA GAGTGGGCAA TCAAGGTAAC AGCTTACTAA TTGCCAGACC CTTAACTCAA
TATCGTATTA TCAACTGCAT TAGCCCAACC TATATCCAAC GCTATGGTAC GCCAAGCACC
TTAGCAGACT TACAACACCA CCGAATGATC GGTTACGTCC CGACAGTGAA TCATAGTGCC
TCCATTGATT ATAATTCGGC CGAGTTTGAC TATGTAGAAC AAGGGCAGAA TTGCCAGCAC
ACGGTTCCAA GTGTGATATC GGTGACTAAT TCCGACGCTT ATACCTCGGC ATGTTTAGCT
GGGCTGGGTA TTGCTCAAAT TCCACAGATG GGGGTAACAG ACTACTTAAA TACTGGTCGT
TTAATCCGGA TTTTGCATCA ATATGAAGCA GCTCCTATGC CAGTGAGTAT CTTGTACCCT
TCACGTAGCC AACTACCTAA GCGCCTAAGT TTGTTTATGG ATTGGCTCGA CAGTATTGTT
AAAACCGCAG TAATGAATCA ATAA
|
|---|
| Protein sequence | MNKFEAMRRF VHVAQTGSFT QAAAALHLPK SSISTAVESL EQLLGTRLFQ RSTRRVTLTH
DGAIYLAQCR QILHDIDALE SQFQHENDSV RGVIKVDMPS RFANKTVLPR LSEWCERYPH
VNVVISSTDY HIDPIKSGVD CLIRVGNQGN SLLIARPLTQ YRIINCISPT YIQRYGTPST
LADLQHHRMI GYVPTVNHSA SIDYNSAEFD YVEQGQNCQH TVPSVISVTN SDAYTSACLA
GLGIAQIPQM GVTDYLNTGR LIRILHQYEA APMPVSILYP SRSQLPKRLS LFMDWLDSIV
KTAVMNQ
|
|---|
| |