Gene Sfri_0900 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0900 
Symbol 
ID4276997 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp1059076 
End bp1060284 
Gene Length1209 bp 
Protein Length402 aa 
Translation table11 
GC content44% 
IMG OID638133666 
Producthypothetical protein 
Protein accessionYP_749591 
Protein GI114562078 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG4591] ABC-type transport system, involved in lipoprotein release, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.886297 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTACATA TCAAACCGAT TTTATCCAGT TTAATGCGCA GTAAAAGTGC GCCGGTTTTA 
TTGCTATTGC AGATTATTTT GTCAGTTGCG ATAGTCGCCA ATGCGAGCTT TATTATTAAC
GAACGTTTGT CGCTAATGCA GCGAGAATCT GGCTATGCCG AAGATCAGAT CCTGACCTTT
AACCTGTATA ATTTCGATCC TGCTATCGAC AACATGAAAC AAAACCAAGT TGACCAACAA
ATTTTGCGTT CGCTGCCCAA TGTAATTGAT GCCAGTTACA GCAATATGTT GCCGTTAAGC
GGCAGCGGAT GGATGGATCG CTATGTTGAC GGCCCAGATG CCGATACCGC TAAAAGCACC
CCTGGGTTTG CCTTTTATTT GGGTAATGAG CACTTACTCA ATGTGATGGG AGCGAAGTTA
ATTGCCGGGC GAAATTTTAC CGCCGATGAA ATTAATACCA GCTTAGATGA CAGCGGCATG
ATGGCGTTAG TGTCGCAACC GTTAGCCAAA GCCTTTTGGG GCGATGAGTC ACCTTTAGGT
AAAACCATGT ATCAAGGTGA GCAAGCCGTG ACCATTATAG GCGTAGTGGA TAAGCTGCAA
GGTGCTTGGG TTGACCACGA AAACTTTGAA TACAGCGTGA TCCAGAATAT CGATTTTGGT
GGCAGTAGTA GTAATAAATC ATACATGGTG CGGGCATTAC CTGAACATAT TCCAGCGTTA
GAAGAAGCCA TTAGTAAAGC CTTGTATGCA GAAAACCCAA ACCGTGTAGT GGAGAACTTC
CAAACACTCA CCACGATTAA AAATTTAACT TACAGTAACC ACCGTTTAAT GGCGACAGTG
TTAAGTATTA TGGTGGTGTT ATTGTTATTA ATTACAGCGT TGGGATTAAC CGGTATGGTG
ATGTTTAATA TTCAACGCCG CACCAAACAA ATAGGCACTC GCCGCGCGCT GGGTGCACGT
AAGCGTGACA TTATTGAATA CTTTATGGTG GAAAATTACC TAATTTGTAT TGTCGGTGGG
GTCATCGGTG GCATGCTATC GTTAGTACTT GGGCAGCAAT TAATGTCACT GTATAGCTTG
CCTATGGTGC CAGTGATTTA TCCGATTGTA TCTGTTATTG GTTTGCTGGT AGTGACAACG
CTAGCGGTAA TAGTGCCGGC CGCTAAAGCC GCGAATATTT CACCCGCCAT GGCAACGCGC
AGTGTGTAA
 
Protein sequence
MLHIKPILSS LMRSKSAPVL LLLQIILSVA IVANASFIIN ERLSLMQRES GYAEDQILTF 
NLYNFDPAID NMKQNQVDQQ ILRSLPNVID ASYSNMLPLS GSGWMDRYVD GPDADTAKST
PGFAFYLGNE HLLNVMGAKL IAGRNFTADE INTSLDDSGM MALVSQPLAK AFWGDESPLG
KTMYQGEQAV TIIGVVDKLQ GAWVDHENFE YSVIQNIDFG GSSSNKSYMV RALPEHIPAL
EEAISKALYA ENPNRVVENF QTLTTIKNLT YSNHRLMATV LSIMVVLLLL ITALGLTGMV
MFNIQRRTKQ IGTRRALGAR KRDIIEYFMV ENYLICIVGG VIGGMLSLVL GQQLMSLYSL
PMVPVIYPIV SVIGLLVVTT LAVIVPAAKA ANISPAMATR SV