Gene Sfri_0898 details

Gene Information

• Locus tag: Sfri_0898
• ID: 4276995
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 1057023
• End bp: 1057721
• Gene Length: 699 bp
• Protein Length: 232 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 638133664
• Product: ABC transporter related
• Protein accession: YP_749589
• Protein GI: 114562076
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTATCCA TGAAAAATAT CAGTAAAGTA TTCAAAACTG ACTTAGTTGA AACCCATGCA 
CTGCGTGACT TTAACCTTGA AGTGAATGAA GGCGAGTTTG TCGCGGTTAC AGGGCCGTCT 
GGTTCAGGTA AAACCACCTT TTTGAATATT GCGGGGTTGC TCGAAGGCTT TACCTCTGGC 
GAGTTCAGCC TTGATGGCGT CAATGTGTCG AATTTAAGTG ACAACAAAAG CGCTAAAGTT 
CGAAATGAAA AAATTGGCTT TATCTTTCAG GGATTCAACC TTATTCCAGA CCTTAATTTA 
GCCGAAAATG TTGAAGTGCC GCTGCGTTAT CGCGGTATGA ATGCCAGCGA GCGTAAGCGC 
CGAGTAGAAT CCGCATTAGA ACAAGTCGGC TTAGGTGCGC GGATGAAACA CTTACCGACA 
CAATTGTCTG GCGGACAACA ACAACGTGTC GCTATTGCGC GTGCATTAGC AGGCGAACCA 
CGGTTTTTAT TAGCCGATGA ACCAACCGGT AATTTAGACA GCTTAATGGC GCGCCAGGTG 
ATGGAATTAC TTGAAAATAT CAATCAACAA GGCACCACTA TTATTATGGT GACCCATGAC 
TCAGAGCTTG CGCGTCGGGC CCAGCGCAAT ATTCAAATTG TTGATGGCCA GGTGTGTGAT 
TTTTCGATGT ACCAACCAGC TGCTACCGGC ACTCGCTAA 

 

Protein sequence

MLSMKNISKV FKTDLVETHA LRDFNLEVNE GEFVAVTGPS GSGKTTFLNI AGLLEGFTSG 
EFSLDGVNVS NLSDNKSAKV RNEKIGFIFQ GFNLIPDLNL AENVEVPLRY RGMNASERKR 
RVESALEQVG LGARMKHLPT QLSGGQQQRV AIARALAGEP RFLLADEPTG NLDSLMARQV 
MELLENINQQ GTTIIMVTHD SELARRAQRN IQIVDGQVCD FSMYQPAATG TR