| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0886 |
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| Symbol | |
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| ID | 4276983 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 1040904 |
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| End bp | 1042643 |
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| Gene Length | 1740 bp |
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| Protein Length | 579 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638133652 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_749577 |
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| Protein GI | 114562064 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGTGT TTTTGATGTC TGTTAACGAC CCGTGTTTTA TTCCTTTTAG TGATGCGATG
GCTTTCAATA ACACGCTTGC CGAACAAGGG TTGCCTGAAT CTTTTACCTT TCCGTTTTAT
TATCAACCTC ATCCATTAAC CATACTGGCA GCACAGCAGT TACAGCAGGT GTTACTTGAG
GCTAATCCTT GGGAACATAA TTTTGGCTTA GACAGCGAAC GTGATCGTGG CATGGTGATT
GGCAAGATGT TTGGTGTGTT GGTGGTTACA GACACGCTCG GGCAACTTGG CTTTTTAGCC
GCATTTTCAG GTAAGTTAGC CGACCAAAAT ATCTTGCCAC CGTTTGTGCC ACCAGTGTTT
GACATGCTGA CCCATGACAG TTTTTTTAGT CATGAAAATA AACAGATTAA CCAAATTAAT
CTGTCGATAA GCCAGCATGA AGCGAATCCG TTATTAGCAA CATTAACCGC GACTTTAGCT
GCGCAACAGC ACCAGGCAGA AAATGAGCTT GAGCAGCAAC GTAACGCAAT AGTTGAAGGC
CGCAAACAGC GTAAGCTGCA ACGTGAGCAA GCAGATGATG CATTAGCACA AGCAAGCATT
AACGACGATA GCCATAAAAC ACTGTCTATC GAGTTAAGCC GTCAAAGTGT GCAGCAAAAA
CATCAGCTAA ACGCGTTAAA ACAACAGTGG CAGACTCAAA TTGAAGTCAC TAAAGTGGCC
TTAGATGCAC TTGCGCAACA AATTAAAAAG TTAAAACAAC AACGTAAACA ACTTTCAAAT
GGATTACAAA AAAAGCTCTT CGCCCAATAT CAGTTTTTAA ATACCTTGGG TGAAGCGCGT
GATTTAAACG ATATTTTTAA TGATGCACCG AATCATTTAC CGCCTGCTGG TGCAGGTGAA
TGTGCTGCAC CTAAGTTATT ACAGTACGCA TTTACTCATC AATTTACTCC AATTGCCATG
GCAGAGTTTT GGTGGGGATC ATCACCTAAA TCTGAAATAA AACAGCACAA AAATTTCTAT
CCCGCTTGTC ACGGAAAATG CCGACCTATT TTAACCCACA TGCTAAAAGG CATGCTGGTT
GATGACGATC CACTATTGAT TAATCCGGGT AAAGATCAGC ATATTGATAT TATTTATCAA
GATGATGCGA TGGTGATTAT TAATAAACCG GCGGAGTTAT TATCGGTACC AGGAAAAAAT
ATCACCGACT CGGTGTTTAG CCGTATGCAG CAACAATTCC CCAATGCAAC GGGGCCGCTG
ATTGTTCATC GCCTAGACAT GTCCACATCA GGGTTAATGG TGATAGCACT CACCAAAGAA
GCCAACAAAG CCCTACAACA ACAGTTTATT CAGCGTAGCG TCACTAAACG TTATATCGCG
TTAATTGAAG GTGTGCCGAG CCAAGATGAG GGCGACATTA GTTTGCCATT ACGGGTAGAT
TTGGACGACC GCCCTAAGCA GCTAGTGTGT TATGAACATG GCAAGCATGC CGAAACGCAT
TGGCAAGTGT ATCAACGTCA AGGGCAACGT ACTTTAGTAT ATTTGTACCC TAAAACGGGG
CGAACCCATC AATTACGGAT GCATTGCGCC CATCACGATG GCCTGCATAT GCCAATTGTC
GGTGATGATT TATACGGTGT CGCGACCAAC AGATTGCATT TACACGCGCA GTATTTAAGC
TTAAATCATC CGGTAAGCGG AAAAGAAATG GTATTTGAAA TCAAAGCGGA TTTTGAATAG
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| Protein sequence | MSVFLMSVND PCFIPFSDAM AFNNTLAEQG LPESFTFPFY YQPHPLTILA AQQLQQVLLE
ANPWEHNFGL DSERDRGMVI GKMFGVLVVT DTLGQLGFLA AFSGKLADQN ILPPFVPPVF
DMLTHDSFFS HENKQINQIN LSISQHEANP LLATLTATLA AQQHQAENEL EQQRNAIVEG
RKQRKLQREQ ADDALAQASI NDDSHKTLSI ELSRQSVQQK HQLNALKQQW QTQIEVTKVA
LDALAQQIKK LKQQRKQLSN GLQKKLFAQY QFLNTLGEAR DLNDIFNDAP NHLPPAGAGE
CAAPKLLQYA FTHQFTPIAM AEFWWGSSPK SEIKQHKNFY PACHGKCRPI LTHMLKGMLV
DDDPLLINPG KDQHIDIIYQ DDAMVIINKP AELLSVPGKN ITDSVFSRMQ QQFPNATGPL
IVHRLDMSTS GLMVIALTKE ANKALQQQFI QRSVTKRYIA LIEGVPSQDE GDISLPLRVD
LDDRPKQLVC YEHGKHAETH WQVYQRQGQR TLVYLYPKTG RTHQLRMHCA HHDGLHMPIV
GDDLYGVATN RLHLHAQYLS LNHPVSGKEM VFEIKADFE
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