Gene Sfri_0875 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0875 
Symbol 
ID4278632 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp1030055 
End bp1031161 
Gene Length1107 bp 
Protein Length368 aa 
Translation table11 
GC content46% 
IMG OID638133641 
Producttransport system permease protein 
Protein accessionYP_749566 
Protein GI114562053 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0609] ABC-type Fe3+-siderophore transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones43 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTGATG CATCGCAACG TCGCTACTAT GTTTGTTTCA GTCTGTTGGT ATTGGCTACG 
CTGCTTACCC CGATATTTGC CGCCAGTTTT GGGGCGGCCA ACATTCATCT TAATGACGTA
TTAATGATAT TTAATACCTT ATTAGGCGGC GACATGCCGA GTGCGATTGA TGGCAGTGAA
CATGCGGTTA CGATAACCCA ACGTATTGTG CTTGAATTAC GCTTACCGCG AATTTTGTTG
GCCTTTGTGG CTGGCGCAGG GTTATCTATA GCCGGCAGTG TTTTACAAAC AGTGACCCGC
AATCCGTTAG CCGACCCGTA TTTATTTGGC ATTAGCTCCG GGGCGTCATT TGGTGCGGTG
TTAGTGGTGT CGTTATTCAG CCAAACCGGT TTATTTGCCG AGATGTTTTC TGGAGTATTG
ACCATAGCAC CAAGCTTTAC CGCACAACCT TGGTGGTCTT GGTCGACATT AAGTATACCG
ATAGGAGCAT TCATCGGCGC CAGTTTATCA GTGCTGGTAG TGTTTATGTT ATCGGGACCT
GGTCGAAGTA GCCAGGTTGA ACGTATGTTG CTGTCTGGTG TGGCAACGTC GTTTCTATTT
GGCGCATTGA CCAGCTTGCT GTTGTATTTT TCGACTCCAC AGGCTGCGGC GTCAGTACTG
TTTTGGAGCT TAGGCAGTTT TGCTAAAGCC AGTTGGTCTA ATTTACTCTT ACCCAGTGTG
ACGGTAGGGG TTAGTTTATT GGTTATGTTG GCGTTCAGGC GGCAAATTAT GGCGCTGCAA
GCGGGTGATG AAACGGCTCA TACATTAGGA ATAAATGTCG CTAAATTGCG CTTAAGTATG
CTGTTACTGT GTTCGCTTAT TACGGCAATG TTGGTGGCAA CTTGTGGTGG CATTGGTTTT
GTTGGTTTGA TGATCCCGCA TACGGTTAGG CTATTATTTT CCGGACGTCA GCCGATGATC
TTAACCGCGA TGTTGGGTGG CTTATTTATG GTGTGGATTG ACGTGATAGC ACGATGCATT
TTATTTAACC AAGAATTGCC TGTCGGCATT ATTACTGCTG CATTGGGCAG CGTATTTTTC
TTGTTTATTT TGCGTCAACG CCGTTAA
 
Protein sequence
MIDASQRRYY VCFSLLVLAT LLTPIFAASF GAANIHLNDV LMIFNTLLGG DMPSAIDGSE 
HAVTITQRIV LELRLPRILL AFVAGAGLSI AGSVLQTVTR NPLADPYLFG ISSGASFGAV
LVVSLFSQTG LFAEMFSGVL TIAPSFTAQP WWSWSTLSIP IGAFIGASLS VLVVFMLSGP
GRSSQVERML LSGVATSFLF GALTSLLLYF STPQAAASVL FWSLGSFAKA SWSNLLLPSV
TVGVSLLVML AFRRQIMALQ AGDETAHTLG INVAKLRLSM LLLCSLITAM LVATCGGIGF
VGLMIPHTVR LLFSGRQPMI LTAMLGGLFM VWIDVIARCI LFNQELPVGI ITAALGSVFF
LFILRQRR