| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0872 |
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| Symbol | metH |
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| ID | 4278629 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 1024225 |
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| End bp | 1027941 |
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| Gene Length | 3717 bp |
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| Protein Length | 1238 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638133638 |
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| Product | B12-dependent methionine synthase |
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| Protein accession | YP_749563 |
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| Protein GI | 114562050 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGAAAT CGACTTCTTA CAGTCAAACA CTTAAACAAC TTAATGCATT GTTAGCGCAG
CGTATTGTGA TTCTAGATGG CGCCATGGGC ACCATGATCC AAGACTATAA GTTGGAAGAA
GAAGATTATC GTGGTGAGCG TTTTAAAGAT TGGCATTGCG ATGTTAAAGG CAACAATGAC
TTATTAGTAC TCAGCCAACC GCAAATCATT AAAGATATTC ATACTCAGTA CCTGTTAAAC
GGTGCCGACA TTATTGAAAC CAACACCTTT AATGCCACCA CCATTGCCAT GGCCGACTAC
GATATGCAGT CACTGGCCGC TGAAATTAAC CTTGCTGGCG CCCGAGTCGC CCGCCAAGCA
GCAGATGAAG TAGCAGCACA AACCGGTTCA CCACGTTATG TTGCCGGTGT ATTAGGTCCA
ACCAACCGTA CCTGTTCTAT CAGCCCAGAC GTTAACGACC CTGGGTTTCG TAATGTCAGT
TTCGACCAAT TAGTCGAAGC TTATGTCGAA TCAACCAGCG CCTTAATTGA AGGCGGCGCC
GATATCATTA TGGTTGAAAC CATTTTTGAT ACCTTAAACG CCAAAGCCGC CCTGTTCGCG
ATTGAAAAAG TATTCGATCA GCTTGGCGAT CGCTTACCCG TTATGATCTC GGGCACTATT
ACCGACGCCT CAGGCCGCAC ACTAACCGGC CAAACAACCG AAGCCTTTTA TAACTCTTTA
CGCCACATCA AGCCGTTATC GATTGGCCTT AACTGCGCCC TTGGGCCTAA AGAGTTACGC
CCGTACGTTG AAGAATTGTC ACGTATTGCC GAATGTTATG TTTCCGCCCA CCCAAATGCT
GGCTTACCCA ACGAATTTGG CGGCTATGAT GAAACCCCAG AAGAAATGGC CGAAGTCATT
AATCAATGGG CGCAAGAAGG CATGCTCAAT ATTGTCGGTG GTTGTTGTGG CAGCACACCG
GCTCACATTA ATGCCATTCG TGAAGCAGTA CTCAGACATG AACCAAGACA GATCCCAGAT
CTTCCAGTCG CGTGTCGTTT ATCTGGCCTA GAACCACTTA CCATCGATAA AAACTCGTTA
TTTGTGAACG TCGGCGAGCG CGCTAACGTG ACCGGTTCGG CTAAATTTTT ACGCTTAATT
AAAGAAGAAA AGTTCGAAGA AGCGTTAGAT GTCGTGCGCG AGCAAGTTGA AAATGGCGCG
CAAATTATCG ACGTCAACAT GGACGAAGGT ATGCTCGATG GCGTAGCGTC TATGGCGAAG
TTTTTAAACT TAATCGCCTC TGAGCCCGAC ATCTCGCGTG TGCCAATCAT GATTGACTCA
TCAAAATGGG AAGTGATAGA AGCGGGCCTT AAATGTGTTC AAGGCAAGTC GATTGTTAAC
TCTATTTCGA TGAAAGAAGG CGAAGCCAAG TTTATTGAGC AAGCTACCTT AGTGAAGCGC
TATGGCGCTG CCGCCATTGT CATGGCCTTT GACGAAGACG GCCAAGCCGA TACTCGTGAG
CGTAAAACCC AAATTTGTAC CCGTGCTTAT CGCATTTTGG TCGATGTGGT TGGCTTTCCA
CCAGAAGACA TTATTTTTGA TCCCAATATC TTCGCCATTG CCACCGGTAT CGATGAACAC
GACAACTATG CCGTCGACTT TATCGAATCG ATAAAAGACA TCAAAGCCAC CTTGCCACAC
GCGATGATCT CCGGTGGCGT GTCTAACGTG TCATTCTCGT TCCGTGGTAA CAACCCAGTA
CGCGAAGCCA TTCACGCGGT ATTTTTATAC CATGCCATTC AAGCAGGCAT GGACATGGGT
ATTGTTAACG CAGGTCAGTT AGCCATATAC GATGATATTG ACCCAGAGCT GAAAAAACGG
GTTGAAAACG TAGTCCAAAA CTTACCTTGC CCGGTTGCCG ACTCAAGTAA CACCGAACAA
CTACTCGACA TCGCTGAAAG CTTTAGAGGC GACGGCTCAC AAGTGGCCAA AAAAGAAGAT
TTAGCTTGGC GTAGTTGGCC GGTATCCAAA CGTTTGTCGC ACGCATTGGT TAAAGGCATT
ACCGAATTTA TTGATGAAGA CACCGAAGCC GCTCGCCTAG AAGCCGTGCG CCCGCTCGAT
GTTATCGAAG GCTCGTTAAT GGACGGCATG AACGTGGTCG GCGACTTATT TGGCGCGGGC
AAAATGTTTT TACCGCAAGT GGTTAAATCG GCTCGGGTAA TGAAAAAAGC CGTCGCTTAC
CTTAATCCTT ATATCGAACT CGAAAAAGTG GCAGGCCAGT CAAACGGGCG AATTTTAATG
GTCACCGTAA AAGGTGATGT GCATGACATC GGTAAAAATA TCGTCGGTGT GGTACTGGCC
TGTAACGGCT ACGAAGTGGT CGACCTTGGA GTGATGGTAT CGGTCGATAA AATTCTCGAT
GCAGTAAAAG AGCATAATAT CGACATCATC GGCATGTCAG GTTTAATCAC CCCAAGTTTG
GATGAAATGG TTCACAACGT GAAAACCTTC CATCGTGAAG GCTTAACCAT CCCTGCAATT
ATTGGTGGTG CAACCTGCTC TAAAATTCAT ACTGCAGTAA AAATAGCCCC GCATTATCCA
CACGGTGCCA TTTACATTGC CGATGCATCT CGCGCCGTGC CTATGGTGTC GAAACTGATT
AATAACGCCA CTCGTCAAGC CACCATCGAC GAAGCCTACG CAGAATACAA CATGATGCGT
GAGAAACGTT TGTCGCAAAC CAAGCGTAAA ACCATCGTGT CGATTGAAGC GGCGCGCGAA
AACCGTTGCA AACACGACTG GGACAGCTAC ACCCCATTCA CGCCTAATGT ATTAGGCCGC
CAAGTGTTTG AAGACTACCC ACTAGAAGAC TTAGTTGAAC GTATCGATTG GACACCGTTC
TTTAGAAGCT GGGAGTTGCA CGGCCATTAC CCAGAAATTT TAAAAGACAA AGTCGTCGGC
GAAGAAGCGG TTAAATTGTT TGCTGATGGC CAAGCCATGC TGAAGCAAAT TATTGCTGAA
AAATGGCTTA CCGCCAAAGC AGTAATCGGT TTATTCCCAG CCAATACCGT CAACCATGAC
GACATTGAAC TGTATACCGA TGAAAGCCGC ACCACATTGG AAATGACCAC TCATCATCTA
CGTATGCAGC TTGAACGCGT GGGTAACGAC AACTTCTGTT TATCAGACTT TGTTGCCCCA
AAAGATTCAG GCGTTGCTGA TTACATGGGC GGTTTTGCGG TAACGACGGG GCACGGTATT
GATGAACATG TTGCCCGCTT TGAAGCCAAT CACGATGACT ACAACGCGAT TATGCTCAAA
TGCTTAGCAG ACCGTTTAGC CGAAGCTTTT GCCGAGCGCA TGCACGAACG TGTTCGTAAA
GAGTTTTGGG GTTATGCTGC GGATGAAGTA CTCGACAATG AAGCGTTAAT TCGCGAACGT
TATAAAGGCA TTCGCCCAGC ACCAGGTTAC CCAGCATGCC CCGACCACAC TGAAAAAGGC
TTGTTATGGG ATTTACTCAA ACCCGATGAA ACTATCGATT TGAACATCAC CGAGAGCTTT
GCCATGTACC CAACGGCAGC GGTATCTGGC TGGTACTTTG CCCATCCGAA ATCACGCTAT
TTTGGCGTGA CTAATATTGG TAAAGATCAG GTTGAAGATT ATGCCCAGCG CAAAGGCATG
ACGTTGGCAG AAGCAGAGAA ATGGTTGTCA CCGATATTGG ACTATGATCC CGAATAG
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| Protein sequence | MAKSTSYSQT LKQLNALLAQ RIVILDGAMG TMIQDYKLEE EDYRGERFKD WHCDVKGNND
LLVLSQPQII KDIHTQYLLN GADIIETNTF NATTIAMADY DMQSLAAEIN LAGARVARQA
ADEVAAQTGS PRYVAGVLGP TNRTCSISPD VNDPGFRNVS FDQLVEAYVE STSALIEGGA
DIIMVETIFD TLNAKAALFA IEKVFDQLGD RLPVMISGTI TDASGRTLTG QTTEAFYNSL
RHIKPLSIGL NCALGPKELR PYVEELSRIA ECYVSAHPNA GLPNEFGGYD ETPEEMAEVI
NQWAQEGMLN IVGGCCGSTP AHINAIREAV LRHEPRQIPD LPVACRLSGL EPLTIDKNSL
FVNVGERANV TGSAKFLRLI KEEKFEEALD VVREQVENGA QIIDVNMDEG MLDGVASMAK
FLNLIASEPD ISRVPIMIDS SKWEVIEAGL KCVQGKSIVN SISMKEGEAK FIEQATLVKR
YGAAAIVMAF DEDGQADTRE RKTQICTRAY RILVDVVGFP PEDIIFDPNI FAIATGIDEH
DNYAVDFIES IKDIKATLPH AMISGGVSNV SFSFRGNNPV REAIHAVFLY HAIQAGMDMG
IVNAGQLAIY DDIDPELKKR VENVVQNLPC PVADSSNTEQ LLDIAESFRG DGSQVAKKED
LAWRSWPVSK RLSHALVKGI TEFIDEDTEA ARLEAVRPLD VIEGSLMDGM NVVGDLFGAG
KMFLPQVVKS ARVMKKAVAY LNPYIELEKV AGQSNGRILM VTVKGDVHDI GKNIVGVVLA
CNGYEVVDLG VMVSVDKILD AVKEHNIDII GMSGLITPSL DEMVHNVKTF HREGLTIPAI
IGGATCSKIH TAVKIAPHYP HGAIYIADAS RAVPMVSKLI NNATRQATID EAYAEYNMMR
EKRLSQTKRK TIVSIEAARE NRCKHDWDSY TPFTPNVLGR QVFEDYPLED LVERIDWTPF
FRSWELHGHY PEILKDKVVG EEAVKLFADG QAMLKQIIAE KWLTAKAVIG LFPANTVNHD
DIELYTDESR TTLEMTTHHL RMQLERVGND NFCLSDFVAP KDSGVADYMG GFAVTTGHGI
DEHVARFEAN HDDYNAIMLK CLADRLAEAF AERMHERVRK EFWGYAADEV LDNEALIRER
YKGIRPAPGY PACPDHTEKG LLWDLLKPDE TIDLNITESF AMYPTAAVSG WYFAHPKSRY
FGVTNIGKDQ VEDYAQRKGM TLAEAEKWLS PILDYDPE
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