| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0856 |
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| Symbol | |
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| ID | 4278684 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1004418 |
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| End bp | 1004966 |
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| Gene Length | 549 bp |
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| Protein Length | 182 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638133622 |
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| Product | methylation site containing protein |
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| Protein accession | YP_749547 |
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| Protein GI | 114562034 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4968] Tfp pilus assembly protein PilE |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATCAAAC TTAACCGCGG TATAGTTTCC TCTCGTCAAT CCGGTTTCAC CCTTATAGAG
CTTGTCGTTG TCATTATTAT TCTTGGCGTA TTGGCTGTTG TCGCAGCGCC TAAGTTTATT
GATTTAAAAA CAGATGCACA TATTGCAGCA ATCAAAGGTG CCGCTGGCTC AATTAAAACA
GCAGTGATGT TATTTAAAAC AAAAACATTA GCCTCGGGCA ATGCGCTTAC AGATACGGTT
GAATTCTCGG GCGTTAAAGG CAGTAATTAC CAACCTTGGG CCGCAGCGGC CAATACTAGT
GGTAGCGGTT TTAATGCGGG TTATACAACG TCGTCAGAAA TCTTTAAAGC GGCTAGGTTA
GAAATGAATG ATTGGTCATA TCGCATTTTT ACGTCTAATA GCAGCTATGC TGTTGTTGCA
GCCCCAAAAA GTGCACTTGC CCTTGCAGAG CCGACTGCAG CCGAAGTTAT TGCAACCAGT
TGTTATTTTC AGTATCACTG GCAGAGTACT GGAGAGCCTG TCATCACAAC GGTAATCGTT
GGGTGTTAA
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| Protein sequence | MIKLNRGIVS SRQSGFTLIE LVVVIIILGV LAVVAAPKFI DLKTDAHIAA IKGAAGSIKT
AVMLFKTKTL ASGNALTDTV EFSGVKGSNY QPWAAAANTS GSGFNAGYTT SSEIFKAARL
EMNDWSYRIF TSNSSYAVVA APKSALALAE PTAAEVIATS CYFQYHWQST GEPVITTVIV
GC
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