Gene Sfri_0848 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0848 
Symbol 
ID4276945 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp996639 
End bp997298 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content42% 
IMG OID638133614 
Productribose-5-phosphate isomerase A 
Protein accessionYP_749539 
Protein GI114562026 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0120] Ribose 5-phosphate isomerase 
TIGRFAM ID[TIGR00021] ribose 5-phosphate isomerase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.611603 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACACAAG ATGAAATGAA AAAAGCAGCA GGTTGGGCAG CACTGCAGTA TGTCAAAAAA 
GACACCATCG TCGGTGTAGG TACAGGCTCT ACAGTTAATC ACTTTATTGA TGCACTTGCC 
ACCATGAAAG ATGATATTGA AGGTGCGGTA TCAAGCTCTG AAGCATCAAC TAAAAAACTC 
ATTGAACTTG GCATTGAAGT ATTTGATTTA AACAGTGTTG ATTTGATAGA TGTCTATGTT 
GATGGCGCGG ACGAGATTAA CGACCGCATG GACATGATTA AAGGCGGCGG AGCTGCATTA 
ACTCGCGAAA AAATTGTCGC GGCGGTAGCA AAACGGTTTA TTTGTATTGT AGATAATACC 
AAACAAGTGC CAATTTTAGG TGAGTTTCCA TTGCCTGTTG AAGTCATCCC GATGGCACGA 
TCTTATGTGG CACGTGAGTT GGTAAAATTA GGTGGAGATC CAGTTTACCG TCAAGGCGTA 
ATAACCGATA ACGGCAACGT TATTTTAGAT GTCTACAATA TGAAAATTCT AGACCCTAAA 
GTGATGGAAA CTAAAATCAA CGCCATCGTC GGTGTTGTGA CAAATGGTTT ATTTGCGAAC 
CGCGGTGCCG ATGTACTACT CGTAGGCACC CCTGATGGCG TTAACACCAT CACACTCTAA
 
Protein sequence
MTQDEMKKAA GWAALQYVKK DTIVGVGTGS TVNHFIDALA TMKDDIEGAV SSSEASTKKL 
IELGIEVFDL NSVDLIDVYV DGADEINDRM DMIKGGGAAL TREKIVAAVA KRFICIVDNT 
KQVPILGEFP LPVEVIPMAR SYVARELVKL GGDPVYRQGV ITDNGNVILD VYNMKILDPK 
VMETKINAIV GVVTNGLFAN RGADVLLVGT PDGVNTITL