| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0843 |
|---|
| Symbol | |
|---|
| ID | 4276940 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 991393 |
|---|
| End bp | 992082 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638133609 |
|---|
| Product | pseudouridine synthase, Rsu |
|---|
| Protein accession | YP_749534 |
|---|
| Protein GI | 114562021 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000223089 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCGTTTAG ACAAATTTAT CTGTGAAAGT ACCGAACTAA CTCGGTCATT GGCCAAGAGA
GCCTTGCACC GTGGTGATGT TACCTGTGAT GGTGTTGTGG TAAAAAATTC AGGTTTTAAA
GTACTACCAC AAATGGCAGT GCATTTAGAC GGTACGTTAA TTAGCGTGAT TGGCGAACGT
TACATCATGT TAAATAAACC GGTAGACACC ATCTGTTCAA CCATTGATGA AGAATACCCA
TCAGTATTGA GTTTGATTGA TATTGAGAAA ATGGATACTT TGCACATTGC TGGCCGATTA
GATGTCGACA CCACAGGCTT AGTGTTAATT ACTAGTGATG GTCAGTGGTC GCATAAAATC
ACTTCGCCAA AGAAAGATTG TGGCAAACGC TATTGGGTGG AATTAGCCGA ACCTATTGAT
GACAGTTTAA TCCAGGTATT TGCCGATGGC GTTGAGCTGC GCAATGAAGA TGGACTGACT
AAGCCTGCTT TGCTGGATAT TATTGACTCA ACTCATGTAC GATTGACGAT TAGTGAAGGT
AAGTACCATC AAGTTAAGCG TATGTTTGCC GCGGTGGGTA ATAGAGTGGT TAATTTACAT
CGTGAAGCGG TTGGTGCTAT CGAGTTAAAT GCTGACTTAG CCGCAGGTGA ATGGCGCTTT
TTAACCGATG CTGAAGTCAA GTCTGTGTAG
|
|---|
| Protein sequence | MRLDKFICES TELTRSLAKR ALHRGDVTCD GVVVKNSGFK VLPQMAVHLD GTLISVIGER
YIMLNKPVDT ICSTIDEEYP SVLSLIDIEK MDTLHIAGRL DVDTTGLVLI TSDGQWSHKI
TSPKKDCGKR YWVELAEPID DSLIQVFADG VELRNEDGLT KPALLDIIDS THVRLTISEG
KYHQVKRMFA AVGNRVVNLH REAVGAIELN ADLAAGEWRF LTDAEVKSV
|
|---|
| |