Gene Sfri_0831 details

Gene Information

• Locus tag: Sfri_0831
• ID: 4278782
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: -
• Start bp: 975972
• End bp: 977855
• Gene Length: 1884 bp
• Protein Length: 627 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 638133597
• Product: diguanylate cyclase
• Protein accession: YP_749522
• Protein GI: 114562009
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAAAACAT CACTTCAGAT TCACTTTTTT ATTGCCATTT TTATAGCAAT ATTTTTTTTA 
CCTACATCAG CCTTTGCCGC TTATTACGAC AACGTCAAAG CTGATGCGAT CTATAAAAAA 
ATAGATTTAG CTGATTATGT TGATCAGGTT TCAGGTGAAG AGTTACTCAA CGAATATAAG 
CGGCTCATTG CCTCTGACGA TGAGATCCGT CAAAAACTCT ATGTCCGTTT ATACTGCTGG 
AACCAGCCTT CTACTACAGA TAGTGAACTT GCCAGCGCCA TTAAGTATGC AGAGCAACAA 
CTGCTGATAT ATTCAGTACC CTATCCATCA GCAATTCATA CTGATTTATT ATTATGTTTA 
GGTTATTACA AACAGTTTTC AGGTCAATTA GACGAAGCTC TTGACGATCT TTCTAATGCA 
ATAAATAACG CATACGAACT TGAAGATCCT CGACTTATCG CTGACGGCCG AAGCATTCGA 
GGGGCAATGC TGTCATATCA AGGCAACTAT TCATCTGCAT TAGAAGATTT AATTACATCG 
CAACAATTGT ATGAAAATCT TAATTTAACT TATTGGGCAA ATGATAACTT AAGTGAACTT 
GCTGCAAGTT ATCGGCGTTT TGGTGATGCT GAAACCGCTC TGAAATACCA AATAAAACTT 
GAACAAGCTT ACCTTAAGGC CAATCAACAA ATAGAAGCTG ATAATATCAA TAATCAGATC 
GCGTTTTCAC TTCTAGAGCT TGGGCGTATT GACGAGTCTA CTGCACGATT TAAACAGTCG 
CTTACCTTCT GGAAAACCCA AAAAGATAAC ATTGCTATTG CAGATGCCAA AACCAATATT 
GCAGGAAACC TGATTAAACT AGATAAAATA GATGAAGCAC TAGTGCTGTT AAAGGAAGCA 
GAAAAAGAAA TCCCAGTCAG TAATGATGGG CCGCATAGTT CATTAATGTT ATACCTAGCA 
CAAGTATATT TAGCTAAAAA TGAATTAGAT AAAGCCCTTG AATACAGTCA GCTTGCATCA 
ATTGATTTTA ACCGTGGTGG CAATCAACGC GGTGAAAATG AAAACATCTA TCTCAAAAGC 
GATATCTACC AAGCTAAAGG TGATATTGAA AATGCATTAA AAACATTACA AAAATTTATT 
AAAATGCACA TGGCACTTGA TAAGCAAAAT ATGTCTGATC GCAACTCAGA AATGCAAGCG 
CGCTTTAATA CCAACAAAAT TCAAACCGAA AACGAATGGT TAATACAACG CGACAAAGAT 
AAAGAGCAGC AGTTACAGAT TTTACAGCGT AACGAAAGCA TGCAAATTAT CATTATTATC 
TTAGTTGCGA TTATTTTAAT TATCGTATCA ATGTTTGCTT ACAAGCAAGT TATACGAAAA 
CAACTCTTTA GGCGTTTAGC CCTAACCGAT GAGCTGACTA AATTGGCCAA TAGACGTGAT 
ACCTATTCTC AGGGGCATTA CTTCTTAAAA TCATCCAAAC TATCAGGTAA GCCGTTTTCC 
ATTATCTCTT TTGATGCTGA TCATTTTAAA ATGGTCAACG ATACATTAGG CCATGATATG 
GGCGATAAAG TGCTAGTAAA GCTAGCGTCA ATTAGCGCAA GCATGATGCG CGATACCGAT 
GTTGTTGGAC GTGTTGGCGG TGAAGAATTT TTGATTTTAC TGCCTAATAT CGACAAAACT 
AAAGCCATTG AAATCGCTAA TCGTTTAATT GAAACCATTG CTGATTACGA TTGGACTCAG 
ATTGCGCCGA ACTTACATCA AACCGTCAGT GCCGGGGTTG CCAGCTATAG TAATGAAGAA 
GACTTGTCAC CATTGTTACT AAAAGCCGAC AAAGCGCTCT ATTCTGCCAA AGCTGCAGGT 
CGAAATTGTG TCAAAGCTGA GTAA 

 

Protein sequence

MKTSLQIHFF IAIFIAIFFL PTSAFAAYYD NVKADAIYKK IDLADYVDQV SGEELLNEYK 
RLIASDDEIR QKLYVRLYCW NQPSTTDSEL ASAIKYAEQQ LLIYSVPYPS AIHTDLLLCL 
GYYKQFSGQL DEALDDLSNA INNAYELEDP RLIADGRSIR GAMLSYQGNY SSALEDLITS 
QQLYENLNLT YWANDNLSEL AASYRRFGDA ETALKYQIKL EQAYLKANQQ IEADNINNQI 
AFSLLELGRI DESTARFKQS LTFWKTQKDN IAIADAKTNI AGNLIKLDKI DEALVLLKEA 
EKEIPVSNDG PHSSLMLYLA QVYLAKNELD KALEYSQLAS IDFNRGGNQR GENENIYLKS 
DIYQAKGDIE NALKTLQKFI KMHMALDKQN MSDRNSEMQA RFNTNKIQTE NEWLIQRDKD 
KEQQLQILQR NESMQIIIII LVAIILIIVS MFAYKQVIRK QLFRRLALTD ELTKLANRRD 
TYSQGHYFLK SSKLSGKPFS IISFDADHFK MVNDTLGHDM GDKVLVKLAS ISASMMRDTD 
VVGRVGGEEF LILLPNIDKT KAIEIANRLI ETIADYDWTQ IAPNLHQTVS AGVASYSNEE 
DLSPLLLKAD KALYSAKAAG RNCVKAE