Gene Sfri_0821 details

Gene Information

• Locus tag: Sfri_0821
• ID: 4278774
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 966001
• End bp: 967935
• Gene Length: 1935 bp
• Protein Length: 644 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 638133589
• Product: peptidase U32
• Protein accession: YP_749514
• Protein GI: 114562001
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0826] Collagenase and related proteases

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGAAATT TAGTTAACAT TATGGTTTCT GTAGAATTGT TCACCCCTGA GGCGCCTGTA 
AAGCGCCAAC TTGAACTGTT AGCACCGGCT AAAAATGCTG ATTATGGCAT TGAGGCTATT 
CGTCATGGCG CTGATGCCGT TTATATTGGT GGTCCAGCAT TTGGCGCGCG TCATAATGCT 
GGCAACAGCG TTGAAGACAT CGCTCGCTTA GCTGAATTTG CTCATCGTTA TCATGCCCAA 
GTGTTTGTGG CGCTTAATAC CATTTTAATG GATGACGAGA TTGATAAAGC GCAAAAGCTT 
ATTTGGCAAC TTTATGAAGC CGGTGTCGAT GCCTTGATTG TTCAAGACAT GGGGGTTTTA 
CAATTAGATC TTCCACCTAT CGCGTTACAT GCGAGTACTC AAACTGATAA CCGCAGCCCA 
GAAAAAACAG TCTTTTTCGA ACAAGTCGGT TTTTCACAAG TCGTGTTAGC TCGTGAGTTG 
AATATTCCAC AAATTCGCGA CATTGCTGCT AGCACAAAGA TGAAGTTAGA GTTCTTTATT 
CATGGTGCGT TATGTGTCAG TTATAGCGGT TTATGTAATT TAAGCCATGC GTATTCTAAT 
CGCAGTGCTA ATCGCGGTGA ATGTTCACAG ATGTGTCGAT TGCCGTGTAA TTTAACTACG 
CGTGAAGGTG AAGTATTAGC TGAAAACAAG CATTTATTAT CACTAAAAGA CAATAACCAA 
ACAGATAATT TAGAAGCCTT GATTGATGCG GGTATTAGCT CATTTAAAAT TGAAGGTCGC 
TTAAAAGACA TTACTTACCT TAAGAATGTT ACCGCACATT ACCGCCAACA ACTGGATGCC 
ATTATTGCTA AACGCAATGA TTTGGAATCT ATTTCTCATG GTCGTTGCGA GTTTAATTTT 
ACGCCCGATC CTGATAAAAG TTTTAACCGC GGTAAAACAG ATTATTTTGT CAATGAACGT 
ACTGAGGCCA TTGAGCATTT TAGTTCGCCT AAGTTTATTG GTGAGAAAGT TGGCCGTATC 
ACCCAAGTAG GTAAAGACTT TATTAAAATC GATACCAGTG AAAGTGGCAA AGACATTCAT 
TTTAACAATG GTGATGGCTT ATGTTTTTTT GTTGAACATT ATGAAACCCA GCGGTTGTCT 
GACGATAAGC TCTCCGGCGT GCGCATTAAC CGCGCCGACG GTAATACCTT GTATTTAACT 
GAGGTACCTA AAGATCTTAA AATTGGCGTG ATGATGTTCC GTAACTTTGA TCATAAGTTT 
GAAGCTATCC TGAATAAAGA TTCTGCCACC CGTAAAATTG CTGTTGATAT GCAATTTTTT 
GATAGCGATG ACGGCGTTGG ATTAACCATT ACAGATATAC ACGGTATAAG TGCAACCGTT 
ACCTTAGCTT GCGATAAAGC TCCTGCAAAT GATCAAGCTA AAACGGCAGA AAACCTCAAA 
AAGCAACTCA GCAAACTTGG CAGTAGTGAT TTTGTATTGA ACAAGATTAA TTTACTGACT 
GAGCAAATGT GGTTTTTACC TGCATCGGTG GTTAACGAGC TGCGCCGCGA TGCGGTTAGT 
GCATTAATGG CCACAAGGGT GACGAGTTAC CAACGACCAG AGCGTTGGGT ACATGATAAA 
ACTGCGCGTT TCCCACAAAA AGCATTGAGC TTTTTATCTA ACGTGGCGAA CGAAAAAGCG 
AAATCGTTTT ATCATCAGCA TGGGGTGATT CAAATTGAAG ATACCTATGA GAAAAATAAC 
GTGTTGCATG ATGCACCGTT AATGGTGACC AAACATTGTT TACGTTACAG CTTTAACTTA 
TGCCCGAAAG AAGTTGAAGG GATTAAAGCC GACCCAATGT TTTTAGATGT TGGTAAAGAT 
AAATTGAAGT TGGTGTTTGA CTGCCATAAA TGTGAAATGA TGATTGTTGG TTCTAACCAA 
TTAGTGAAAC AATAA 

 

Protein sequence

MRNLVNIMVS VELFTPEAPV KRQLELLAPA KNADYGIEAI RHGADAVYIG GPAFGARHNA 
GNSVEDIARL AEFAHRYHAQ VFVALNTILM DDEIDKAQKL IWQLYEAGVD ALIVQDMGVL 
QLDLPPIALH ASTQTDNRSP EKTVFFEQVG FSQVVLAREL NIPQIRDIAA STKMKLEFFI 
HGALCVSYSG LCNLSHAYSN RSANRGECSQ MCRLPCNLTT REGEVLAENK HLLSLKDNNQ 
TDNLEALIDA GISSFKIEGR LKDITYLKNV TAHYRQQLDA IIAKRNDLES ISHGRCEFNF 
TPDPDKSFNR GKTDYFVNER TEAIEHFSSP KFIGEKVGRI TQVGKDFIKI DTSESGKDIH 
FNNGDGLCFF VEHYETQRLS DDKLSGVRIN RADGNTLYLT EVPKDLKIGV MMFRNFDHKF 
EAILNKDSAT RKIAVDMQFF DSDDGVGLTI TDIHGISATV TLACDKAPAN DQAKTAENLK 
KQLSKLGSSD FVLNKINLLT EQMWFLPASV VNELRRDAVS ALMATRVTSY QRPERWVHDK 
TARFPQKALS FLSNVANEKA KSFYHQHGVI QIEDTYEKNN VLHDAPLMVT KHCLRYSFNL 
CPKEVEGIKA DPMFLDVGKD KLKLVFDCHK CEMMIVGSNQ LVKQ