| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0817 |
|---|
| Symbol | |
|---|
| ID | 4278770 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 961308 |
|---|
| End bp | 963107 |
|---|
| Gene Length | 1800 bp |
|---|
| Protein Length | 599 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638133585 |
|---|
| Product | alpha amylase, catalytic region |
|---|
| Protein accession | YP_749510 |
|---|
| Protein GI | 114561997 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAGA CAACATGGGC ACTATTGAGT GCAGCATTGG TGTTAAGTGG ATGTCAGCAG
GCAGAAACAG AAGTGGTAGC GTCGGCCGTT CAGCCTTTGC CACAACCAAG CGTACAAGCT
GATATATACC AAGATTACTT ACATCGTGAT GTTCGGGACG ATATTTTCTA TTTTGTATTG
CCAGACCGTT TTTATAACGG CGATAGCAGT AATGACAACG GCTCAACCTC TAAACCAATT
TCAGCTGGTG GTTTTGATAC TAACAGCAGT CGCGGTTTTC ATGGCGGTGA TATATTAGGT
ATTGAACAAA AGTTAGATTA TCTACAAAAC CTTGGTATTA CCGCGATTTG GATGACGCCA
TTATTGCGAA ATAAAGCCAT TCAATCAGAT GGCATTGCGC ATCATGGTTA TTGGATTGTC
GACTTTACCG AAATAGACCC GCATTTTGGC TCTAACGCAG ACTTAAAGCA GCTTATAGAC
TCTGCACATC AACGCGGTAT AAAAGTCTTT TTTGATATTA TTACTAACCA CACTGCCGAT
GTCATCAAGT ATCAAGAGTG TCATCAAGCG TCGGGTGAGT TTATTGCGCC GCAAACCCAT
TGCGAATACA AGTCGTTAGC TCAAGTGGAA AAGGGCGACA GTTACACGCC GTTTGTGCCT
CAAGATCAAG CGAGTGTAAA AGTGCCTGAT TGGTTAAATG ACCCACGTTT TTATCACAAT
CAAGGTGATA GCACATTTAA AGGTGAAAGC TCGTTAAATG GCGACTTTAG TGGCTTAGAT
GATCTTAATA CTGCAGATCC TGAAGTGGTA TCTGGCATGG TTGATATTTA CCAAAATCTG
ATTAAAGAAT TTAAGCCAGA TGGATTTAGG ATCGACACAG TTAAACATGT GGACTTGTCA
TTTTGGCAAA CGTTTAGCCC TGAAATCGTT AACTTTGCCA AGGCGCAAGG CATTCCTCAG
TTTCATGTGT TTGGTGAAGT GTACGATACC AACCCTAACA ACCTCAGTGT TTTTACCACC
CAAGGCAAGT TACCTTCGGT ATTGGACTTT GCGTTTCAAC AAACTGCGGC AGATATTTTT
TATCGCGGCA AGAGTCCTGT ATTAGCCCAG CAATTATTTG CCCAAGATTC GTTATATCAA
GATGACGACA GCCAGGCTGA TTTATTGATG ACTTTTTTAG GTAATCATGA CATGGGACGC
ACTGGTTATT TTATCAATCA AGCCTATCCT GATGTGAGCT CAGCCGATAA ATTGCAACGC
AGTATTTTGT CTCATGCGTT TATGTTTTTA TCTCGTGGTA TTCCTGTGAT TTATTATGGT
GATGAGCAAG GGTTTACGGG TGATGGTAAT GACATTGACG CACGAGAGGA TATGTTTGTA
TCTCACGTTG CTAGCTACAA TGACAACATT TTACTGGGCA CAAAAGCGAC GACCGCAGAT
GATAATTTTG ACCCTAAGCA CCCTTTGTAT CAAGCAATAG CGCAACTGAG TGAACTGCGT
AAGCAATATC CTATTTTGCG TCGTGGTCAA TATCAAGACC GCTTTTACCA AGCAGACAAA
GACATGTTTG CATTCGCTCG GGTAGACCCT GAAACAGGGG CAGAATTTTT GATGGTGTTT
AATAGCGGTG AGCAAGCGCA GACGATTAAT GTCACTCAAG AGGGTAAGCG TTATCGCTTA
ATGACCACAT GGCCAGATGT TGTCGTGCCA TCAATTGAAG ATGCCGCACA GGCCGCATCA
GCAGAGTTAA CGGTGACCTT ACCGCGATTA AGTTATGCAA TTTATACCAC TGCAAGTTAA
|
|---|
| Protein sequence | MNKTTWALLS AALVLSGCQQ AETEVVASAV QPLPQPSVQA DIYQDYLHRD VRDDIFYFVL
PDRFYNGDSS NDNGSTSKPI SAGGFDTNSS RGFHGGDILG IEQKLDYLQN LGITAIWMTP
LLRNKAIQSD GIAHHGYWIV DFTEIDPHFG SNADLKQLID SAHQRGIKVF FDIITNHTAD
VIKYQECHQA SGEFIAPQTH CEYKSLAQVE KGDSYTPFVP QDQASVKVPD WLNDPRFYHN
QGDSTFKGES SLNGDFSGLD DLNTADPEVV SGMVDIYQNL IKEFKPDGFR IDTVKHVDLS
FWQTFSPEIV NFAKAQGIPQ FHVFGEVYDT NPNNLSVFTT QGKLPSVLDF AFQQTAADIF
YRGKSPVLAQ QLFAQDSLYQ DDDSQADLLM TFLGNHDMGR TGYFINQAYP DVSSADKLQR
SILSHAFMFL SRGIPVIYYG DEQGFTGDGN DIDAREDMFV SHVASYNDNI LLGTKATTAD
DNFDPKHPLY QAIAQLSELR KQYPILRRGQ YQDRFYQADK DMFAFARVDP ETGAEFLMVF
NSGEQAQTIN VTQEGKRYRL MTTWPDVVVP SIEDAAQAAS AELTVTLPRL SYAIYTTAS
|
|---|
| |