| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0797 |
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| Symbol | |
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| ID | 4277893 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 937732 |
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| End bp | 938856 |
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| Gene Length | 1125 bp |
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| Protein Length | 374 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638133565 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_749490 |
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| Protein GI | 114561977 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTTTACCA ATGATAAATT AACTGAACTC AATGCCACGA TTTCTCGTGT GACTAAATTA
ACAGACTCAT TTGCTAAATT TCCCCGTTCA ATAAAAATAC CATTGCGTCT TGATGATGAA
ATCCTATCCG ACTCATCATT TACGGATGTC GCTTTTGATG CCACTTCAGC AAGTCATCAT
AATGGCAAAA TGGCAGTAGC AGATAACTTA CAAATTAGCA CCTTGCTCAA TGTGATCACG
GCTATTTCAG AAGCGATTTT TGTGATTAAC TCTGCGGGTG TGATTGAGAT GATCAATCCG
TTAGGCGCTA AATTATTCGG TGCCCCAGCC GAAATGTTAA TCGGTCAAAC CTGGACCGAT
TATTTACAAA GCCCTTTTAA AGATGAGTAT CAATCTTTAT TTTCTTTGTG GAATAGCGCC
AGCGATGAAG CCAATAAAGT GACTCAGTTT AATCATGGTC CTAAAGAAAT TATTATTAAC
CGCGCCGACA GCACGTTACT CGAAGCAGAC TTATCATTGT CATGTTTACC GTCGATGCAG
ATAGGATCTG AGCCGTTATT TATAGGCATC ATGCATAATC TCACTACGCA TAAAGCCGAG
TACAACAAAC TGCGCCACTT AGCCCATACA GACAAATTAA CCGGCCTTTC CAACCGTCAC
GCTTTTGATG ATGCTCTGCA AACCAACTGG AACGACAGTA TTAACCACGA CCAACCGCTG
TGTTTAATCA TTATCGATGT CGATTATTTT AAAATGTTTA ATGACCAGTA TGGTCATGTT
AACGGTGATA AATGTTTGCA AAAAATTGCT CAAGTACTGG CAGAGGTGCT CCCGTCTAAC
AATGCGATGG CAGCCCGTTA TGGTGGTGAA GAGTTTGTGG TCATTCTGCC CAACAGCAAC
CCGTTAACAG CAGAATACAT TGCCAAAAAT ATTCAACGTC GTATTAACCA GTTAAGCTTT
ACCGATATAG GGTTACCTGC ACAAACCAAA ATCAGTGTCA GCCAGGGCAT TGCCTGTGAA
CGCAGTGGCC AATACCGCAC GCCAACCGCA CTGGTTTGCG CAGCAGACAC AGCACTTTAC
CGTGCAAAAT CAACTGGCCG TAACCGCATC AATATGAGTA GCTAA
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| Protein sequence | MFTNDKLTEL NATISRVTKL TDSFAKFPRS IKIPLRLDDE ILSDSSFTDV AFDATSASHH
NGKMAVADNL QISTLLNVIT AISEAIFVIN SAGVIEMINP LGAKLFGAPA EMLIGQTWTD
YLQSPFKDEY QSLFSLWNSA SDEANKVTQF NHGPKEIIIN RADSTLLEAD LSLSCLPSMQ
IGSEPLFIGI MHNLTTHKAE YNKLRHLAHT DKLTGLSNRH AFDDALQTNW NDSINHDQPL
CLIIIDVDYF KMFNDQYGHV NGDKCLQKIA QVLAEVLPSN NAMAARYGGE EFVVILPNSN
PLTAEYIAKN IQRRINQLSF TDIGLPAQTK ISVSQGIACE RSGQYRTPTA LVCAADTALY
RAKSTGRNRI NMSS
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