Gene Sfri_0780 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0780 
Symbol 
ID4278698 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp915440 
End bp916078 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content48% 
IMG OID638133549 
ProductNAD-dependent epimerase/dehydratase 
Protein accessionYP_749474 
Protein GI114561961 
COG category[R] General function prediction only 
COG ID[COG2910] Putative NADH-flavin reductase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATTAG CAGTATTAGG CGCAACAGGT TGGATTGGTG GCACTATCAT GCAACAAGCG 
ATAAGCCGAG GCCATGAAGT GATTGCCGTA GTGCGCGACG CCAGCAAAGT CACTCAAGAT 
GTGGCCGTAC GTACGCTTGA TTTAACCACG ATGACAAGCG ATGCCATCGC TAGCGCATTT 
GCCGATGTTG ATGTTGTTAT AGCGTCAATC GGTGGCCGTG CCGCACAAAA CCATCAAGTA 
GTTTCTCAAA CCGCTAAGCA ATTATTGCAA CACTTGCCTA AAGCTGGCAC ACCGCGTTTG 
TTATGGGTTG GCGGTGCAGG TAGTTTAGAA GTCGCACCAG GCGTGACGTT AGTATCAACA 
CCAGAGTTTC CTGCAGATTA TAAAGCCGAA GCCATCGCCC AAGGTGAGGC ACTAGCTGTG 
TTCCGTGATA CAGATTCTGC TATCGAGTGG ACTTATGTTA GCCCCGCAGC GATTATTTTC 
CCTGGTGAGT CAGAAGGCCC ATACCGTATA GGCGGCAACG AATTTTTTAC CGATGCACTA 
GGCCAAAGCC GAGTATCAGT AGTGGATTAT GCCAAAGCTA TGCTCGATGA AGCCGAAAAT 
GCTCAGCATA TTAATCAACG TATTAGCGTT GCTTATTAA
 
Protein sequence
MKLAVLGATG WIGGTIMQQA ISRGHEVIAV VRDASKVTQD VAVRTLDLTT MTSDAIASAF 
ADVDVVIASI GGRAAQNHQV VSQTAKQLLQ HLPKAGTPRL LWVGGAGSLE VAPGVTLVST 
PEFPADYKAE AIAQGEALAV FRDTDSAIEW TYVSPAAIIF PGESEGPYRI GGNEFFTDAL 
GQSRVSVVDY AKAMLDEAEN AQHINQRISV AY