| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0767 |
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| Symbol | |
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| ID | 4277934 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 897038 |
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| End bp | 899083 |
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| Gene Length | 2046 bp |
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| Protein Length | 681 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638133536 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_749461 |
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| Protein GI | 114561948 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACAAT TTTTCGCACT CAATACTATC AGTAAAAAAT TGCAGTTCAT TTTAATGAGC
GTTGCCCTAA TTTCTACACT GACAGTGACA TCAATATTTA GCGCCTTCGA GCTATCTTCC
GCTAAAAGAG AACAAGTTGA AAGTTTACAC AGCTTATCGC AAATGCTGTC ACCTAATATC
ACCGCAGCCT TATTGTTTGA TGATCAAGAT GCTATTCAAG AACTGATTAA TCCTATTTTG
TTAAGATCAG ATGTATTGTC AGTCAGTGTC ACTAATGTTG AAGGCGCAGT TTTAGCTCAA
GCATTATCAA AGCGCCCTTC TATGACTCTG ACTGATGACG ATCTCAATGA CATCACCCAA
GTAATAACAC CATTAACACT CGACAACCAA AACTATGGTG ATTTACACAT ATCGGTAGAT
GACAGCATTA TTACTGATAG GATTTCGTTT TACGGCCAAT TTATTGTGCT ATTACTCTTA
TCATCCCTTT GTGCCAGCTT TTTTCTATCA TTATTTTTAC GTCGTAAATT TTTAAGTCCG
ATGTTATACC TCGCTAAAAT TTCGCAAAAA ATAACCGAAT CACAAGATTA CAGTTTACGT
GCTCAAATTC AGTCTGAAGA TGAAATTGGC CAATTAACCA CATGTTTTAA TAGCATGTTA
GATAATATTG AACAGCGTGA GAGTTCCCTT GAAACTGAAG TAAAACTGCG TACTGGAGAA
CTTGAAAATG CCAATAGCCA GTTACACGAA TATGCCTATC AAGATGGATT AACTCTGTTA
CCTAATCGAC GTTATTTCTA TGAAAAACTT CAATCGCTCA TTGATACTGA CCACATGGTT
TTTGCGTTAA TTTTTATCGA TCTTGATGGT TTCAAAGAGA TCAACGATTC CTTAGGCCAT
GAATATGGGG ATAGGTTGCT GCATCAAGTT GCTAAACGTT TACGCGGGTG CGTTCGAGAT
CATGATACGG TTGCGCGACT CGGCGGAGAC GAATTCACTT TAATTATTGA AGATGTGAGT
GACTTAGAAC ACGCTGCCTC AATTGCTGAA AAAGTGAAAA GTAGCCTGAT GCAATGCATT
AGCATTGAAG AGGTACAAGT TAATGTGACG GGTAGCATCG GACTCACGTT TTATCCTGCT
GATGGCCAAA ATGTTGAAGC GTTAGTTAAA CATGCCGACC AAGCCATGTA CTTATCTAAA
AGCAAAGGCC GCAATCGATA TGAGTTTTTC TCTCATGCTA TTGAAGAACA AGCCATTGAA
AAACGTCGCC TTATCGAAGA AATCCGCATC GCACTCAAAC TCGGTCAATT TGTGTTGTTT
TATCAACCTA TTTTTGATCA ATGCGGCGTT ACAGTTACTA AGGCAGAAGC GCTCATCCGT
TGGGATCATC CACAACGCGG CCTTATTGGA CCCAATGAAT TTATTCCAGT GGCCGAACAA
AATGGTTTAA TAGAAGAAAT TGGTAACTGG GTAAGAAATC AAGCGATTGA AGATGCCGCT
CATTTTTATC AGTTGTCGGG CAACAAAATG CAAGTGAGCG TTAATACCTC ACCGCTACAA
ATTGATCATG AGGGTTTGTG GGTCGATGAA TGGATATTAG CGTGCAATAA ATTCAATTTA
CCTCGCGATA CCATGATTAT TGAAGTGACA GAAAATACCT TGATGGACCC AGACTCACCC
ATTCAACAAC AAATGCTGCG ACTCAACAAT TACGGTATTG ATATCGCCAT TGATGATTTT
GGGGTCGGAT ATTCATCATT AGCCTATTTG CAGCGGCTCG ATATTGATAT TTTAAAAATT
GACCGTTCAT TTATTAAGCA TATGGAAAGC AATGAAAATA GTATTGCGTT GGTGCGAGCC
ATTATCACCA TGGCACATCA TTTAAAGGTT AAAGTGGTCG CTGAGGGCGT TGAAACCATA
GGGCAGCATC AGTTACTTCA ACAACTTTCA TGCGATTACT TACAAGGCTA TTTATTTGCC
AAACCTATGC CGACACAAAA TTTTATTGAC CGTTATGTCA GATCATCAAC ACTTGCCGCA
GAGTAA
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| Protein sequence | MKQFFALNTI SKKLQFILMS VALISTLTVT SIFSAFELSS AKREQVESLH SLSQMLSPNI
TAALLFDDQD AIQELINPIL LRSDVLSVSV TNVEGAVLAQ ALSKRPSMTL TDDDLNDITQ
VITPLTLDNQ NYGDLHISVD DSIITDRISF YGQFIVLLLL SSLCASFFLS LFLRRKFLSP
MLYLAKISQK ITESQDYSLR AQIQSEDEIG QLTTCFNSML DNIEQRESSL ETEVKLRTGE
LENANSQLHE YAYQDGLTLL PNRRYFYEKL QSLIDTDHMV FALIFIDLDG FKEINDSLGH
EYGDRLLHQV AKRLRGCVRD HDTVARLGGD EFTLIIEDVS DLEHAASIAE KVKSSLMQCI
SIEEVQVNVT GSIGLTFYPA DGQNVEALVK HADQAMYLSK SKGRNRYEFF SHAIEEQAIE
KRRLIEEIRI ALKLGQFVLF YQPIFDQCGV TVTKAEALIR WDHPQRGLIG PNEFIPVAEQ
NGLIEEIGNW VRNQAIEDAA HFYQLSGNKM QVSVNTSPLQ IDHEGLWVDE WILACNKFNL
PRDTMIIEVT ENTLMDPDSP IQQQMLRLNN YGIDIAIDDF GVGYSSLAYL QRLDIDILKI
DRSFIKHMES NENSIALVRA IITMAHHLKV KVVAEGVETI GQHQLLQQLS CDYLQGYLFA
KPMPTQNFID RYVRSSTLAA E
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