| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0703 |
|---|
| Symbol | |
|---|
| ID | 4278746 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 827713 |
|---|
| End bp | 828747 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638133467 |
|---|
| Product | DNA polymerase III, delta subunit |
|---|
| Protein accession | YP_749399 |
|---|
| Protein GI | 114561886 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1466] DNA polymerase III, delta subunit |
|---|
| TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000446236 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGGTTT ATCCTGATCA ACTCAAGCAA CATCTCAAAC CACTACCGCA ATGCTTTTTA
CTGTTTGGTG ATGACCCATG GTTAATCGAA AACAGTAAAC AATTGATCCT CAACGCCGCT
AAAAAACAAG GCTTTGAAGA GCGTGTACAG TTAAGCCAAG AAACCGGTTT TAACTGGGGA
GATTTAGTCC AAGAATGGCA AGCAATGAGC TTATTTGCCA GCCGACGGAT TATTGAGTTA
ACCCTGCCGC AAGGTAAACC TGGCATGGAG GGAGCCGCAG CATTTCAAAC GCTGTTGCAA
CACCCTAATC CAGATATGTT ATTGATTATC CAAGGCCCCA AAGCCAGTGC AGAGCAAACC
AATAGCAAAT GGTTTAAATC ACTCGATGCC AAAGGTATAT ACCTACCCTG CACCACGCCT
GAAGGTAAAC AGTTTGAACG CTGGTTAGAC AGTCGTATTT CTCATTATGA ACTCACAGTT
CACCATGATG CAAAAGCCAT GTTATTTACG CTATTTGAAG GTAACTTATT GGCGGCTGAA
CAAGCGATGC AATTGCTACA ACTGCTCAGT CCTAAGCAAA ATATTACCCC AGAACAACTC
AGTGAATATT TCGAAGACCA ATCTCGTTTC AGTGTGTTTC AACTCTGTGA TGCCATTCTA
GGTAACCATC AAAAACATGC ACAGCACATG CTGGCTCAAT TGCAGGCCGA AGGCACTGCA
ATGCCCATTT TAATGTGGGC TTTATTCAAA GAGATAAATT TGCTGCTCAC CTTAAAACTG
GCCGTCCATA ATGGCGAACA ACTCAGCAAA CTGTGGAGCC AACACCGAAT TTGGGATAAG
CGTAAACCGC TTTATCAAGC AGCAATAACG CGATTAGATT TAGATCATAT CGAACATATG
CTCGCGTTTG CGTCTAAATT AGAATTAAAT CTCAAACAAA AAGGGCTTGA AGATTGGATT
GGTCTCAGCC ATTTATGCAT TTTATTTGAT CCACGAGCAC ATAACCGTTT AGCTCATATT
GAATTAACTG ACTGA
|
|---|
| Protein sequence | MRVYPDQLKQ HLKPLPQCFL LFGDDPWLIE NSKQLILNAA KKQGFEERVQ LSQETGFNWG
DLVQEWQAMS LFASRRIIEL TLPQGKPGME GAAAFQTLLQ HPNPDMLLII QGPKASAEQT
NSKWFKSLDA KGIYLPCTTP EGKQFERWLD SRISHYELTV HHDAKAMLFT LFEGNLLAAE
QAMQLLQLLS PKQNITPEQL SEYFEDQSRF SVFQLCDAIL GNHQKHAQHM LAQLQAEGTA
MPILMWALFK EINLLLTLKL AVHNGEQLSK LWSQHRIWDK RKPLYQAAIT RLDLDHIEHM
LAFASKLELN LKQKGLEDWI GLSHLCILFD PRAHNRLAHI ELTD
|
|---|
| |