Gene Sfri_0697 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0697 
Symbol 
ID4278740 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp821978 
End bp822991 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content41% 
IMG OID638133461 
Productlytic murein transglycosylase B 
Protein accessionYP_749393 
Protein GI114561880 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2951] Membrane-bound lytic murein transglycosylase B 
TIGRFAM ID[TIGR02282] lytic murein transglycosylase B 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0681454 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAAAGA TAACCGTTCA AATCGCCAGC TTAGCATTAC TTATTGGTAC TGTTTTTAAC 
GCAAATGCAG TGACCGAAGC AGACACTCAA GCATTACAGA AAACCTTTAT TGCTGAACAA 
GTAAAACAAG GATTCAAGCA ACAAGAAGTC GAGCAGTTTT TAGCGTCTTC AAGCTTCGAT 
CAAACTATTA TTGACGCGAT ATCAAAACCT TGGGAAGCGA AACCTTGGCA CCAATATTAT 
CCTATTTTCT TGACCGACAA ACGGTTGCAA AAAGGGCTAG AGTTTTGGCA AGAAAACCAG 
CAAACCATCG ATAAAGCAGC CAAACAATTT AACGTCGATC CACAAATTAT AGTGGCCATT 
ATTGGCATTG AAACATTCTA TGGTGGTTAC TTAGGCAATT ATCGTGTGCA AGATGCCCTG 
TATACGTTGG GCTTTCATTA CCCACCACGA GCAACGTTCT TTCGCAGTGA ATATGCCAAT 
TTAATGTCGT TGATTAAAGA AGAAAAGCTC GATAATGACA CCTTAAAAGG CTCATATGCT 
GGAGCAATGG GTTATGGTCA ATTCATTCCA TCTAGCTACC GTCATTACGC TGTCGACTTT 
GATGGCGACG GTCGACGAGA TTTATTAACC AGTAAAGCAG ATGCTATTGG CAGTGTGGCT 
AACTATTTTC ATCAACACGG TTGGCAAAAA GGTCAGCCTG TGGCGCTATT ACTAAATCAC 
ACATCAAGCA CAGCCCCAAA AGCGAATGTT TGGACCAAAG AAAAGCTTCA CTACAAGGTA 
TCAGACATTC TTAGCCCAAC ATTAAGCTTG GCAGATAATC AAGATATTGA TGCATCACAA 
GCTGCATTGT TAATTAAACT AGATCAAGCT GAAAGCGCTG AATACTGGCT CGGGCTTAAA 
AACTTTTATG TGATCACTCG CTATAATCGC AGCCCGTTAT ATGCAATGGC AGTTTATCAG 
TTTAGCCAAC AACTTAATGC CCACCACAAA TCGGTAAATC AACATGGCAA TTAA
 
Protein sequence
MTKITVQIAS LALLIGTVFN ANAVTEADTQ ALQKTFIAEQ VKQGFKQQEV EQFLASSSFD 
QTIIDAISKP WEAKPWHQYY PIFLTDKRLQ KGLEFWQENQ QTIDKAAKQF NVDPQIIVAI 
IGIETFYGGY LGNYRVQDAL YTLGFHYPPR ATFFRSEYAN LMSLIKEEKL DNDTLKGSYA 
GAMGYGQFIP SSYRHYAVDF DGDGRRDLLT SKADAIGSVA NYFHQHGWQK GQPVALLLNH 
TSSTAPKANV WTKEKLHYKV SDILSPTLSL ADNQDIDASQ AALLIKLDQA ESAEYWLGLK 
NFYVITRYNR SPLYAMAVYQ FSQQLNAHHK SVNQHGN