Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0687 |
Symbol | |
ID | 4277227 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 812668 |
End bp | 814029 |
Gene Length | 1362 bp |
Protein Length | 453 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638133451 |
Product | L-serine dehydratase 1 |
Protein accession | YP_749383 |
Protein GI | 114561870 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1760] L-serine deaminase |
TIGRFAM ID | [TIGR00720] L-serine dehydratase, iron-sulfur-dependent, single chain form |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGATTAGTG TTTTCGATAT TTATAAAGTG GGTATTGGAC CTTCAAGCTC TCATACCGGC GGACCAATGA AAGCAGGAAA AGAGTTTATC GATGAGTTAC GTTCGAAAGG CAAGCTTCGA GAAATCACTA GAATTACTGT TGATTTATAT GGCGCACTGT CACTCACAGG AAAGGGTCAC AACACAGATA TAGCCATTAT TATGGGTCTA GCGGGTAATC TACCGGAAGA TGTCGATATC GAAAGTATCC CCAGTTTTAT TGCACGGCTG GAGAAAAGTG AAAGGCTTCC TGTAGGCATG CACTGTCATA CTGTGTCCTT CCCTTATAAT AAAAGCATCC ACTTCCATAA TACAAATTTG AAACTGCATG AAAATGGCAT GCAAATCCAT GCATGGATAG AAAACGAGAA AGTGCTCTCC AAGACTTACT ATTCTATCGG AGGCGGATTC ATTGTTGATG AAGAAAATTT CGGCAAACAA GAGGAACAGT TAGTAAAAGT TCCTTATGAA TATTCTACAG CAGAAGAATT GATTAAACAT TGTAAAACTG AAGGATTATC GATTAGCTCT TTAGTGTTAG AGAATGAAAA ATCGCTGCGC CCAGAAGGTA ATATTCAAGC TCAGTTTACT CATATCTGGA AAACGATGCG TGAATCTATG GATCGCGGTA TGAATACCCA AGGGGTACTA CCAGGACCAA TGCGGATCCC TCGTCGTGCT GCTGCGCTTT GCCAACAACT TGTGGCTTCT GAATCTACAT CTAATGACCC TATGGCTGTT ATTGATTGGG TCAATATGTT TGCTTTTGCA GTGAGTGAAG AAAATGCATC TGGAGGCCGA GTTGTCACAG CACCTACTAA TGGGGCTTGC GGTATTGTCC CAGCAGTAAT TGCTTATTAC GACAAGTTTA TCCATAGAGT TACCGAGAAA GACTATATGC GTTTTCTGGC GGCATCTGGG GCTATTGGCG GGTTATTTAA ACAGAATGCT TCCATTTCTG GAGCGGAAGT TGGCTGCCAA GGAGAGGTTG GAGTCGCCTG TTCAATGGCT GCGGCAGGGC TTGTTGAGTT ATTGGGTGGT AGTCCTGAAC AAGTATGTAT CGCTGCAGAA ATTGGTATGG AACACAACCT GGGACTGACT TGCGACCCAG TATCTGGAAG GGTGCAAATA CCTTGCATTG AACGTAATGG AATTAACGCA GTAAAAGCGA TTAACTCTGC ACGTATGGCA CTACGTCGTT CTTCAGATCC TCTCGTGTCT CTTGATAAAG TCATCGAAAC AATGATGGAA ACAGGTAAGG ATATGAACTC TAAATATAGA GAAACCTCTT TGGGTGGATT AGCTATCAAA GTTCTTTGCT GA
|
Protein sequence | MISVFDIYKV GIGPSSSHTG GPMKAGKEFI DELRSKGKLR EITRITVDLY GALSLTGKGH NTDIAIIMGL AGNLPEDVDI ESIPSFIARL EKSERLPVGM HCHTVSFPYN KSIHFHNTNL KLHENGMQIH AWIENEKVLS KTYYSIGGGF IVDEENFGKQ EEQLVKVPYE YSTAEELIKH CKTEGLSISS LVLENEKSLR PEGNIQAQFT HIWKTMRESM DRGMNTQGVL PGPMRIPRRA AALCQQLVAS ESTSNDPMAV IDWVNMFAFA VSEENASGGR VVTAPTNGAC GIVPAVIAYY DKFIHRVTEK DYMRFLAASG AIGGLFKQNA SISGAEVGCQ GEVGVACSMA AAGLVELLGG SPEQVCIAAE IGMEHNLGLT CDPVSGRVQI PCIERNGINA VKAINSARMA LRRSSDPLVS LDKVIETMME TGKDMNSKYR ETSLGGLAIK VLC
|
| |