Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0685 |
Symbol | |
ID | 4277226 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 810844 |
End bp | 811656 |
Gene Length | 813 bp |
Protein Length | 270 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638133450 |
Product | integrase catalytic subunit |
Protein accession | YP_749382 |
Protein GI | 114561869 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2801] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCATCGAA GTAGCTATAA ATATTGGCTA AAAAGAAAAG AACATATCGA TGCTGACTTT ACTATTTTAT GCAGTGAAGT GAAGGCCGCG CATCGTATTA GTAATGGCTC TGCCGGTGCT AGAACGATAG CGCAATTAGT GACTAACAAA GGGATTAATC TCAGTCGTTA TCGAGCCCGT AATCTAATGA GAAAGCTTGG ATTATTAAGC TGTCAGCAGC CTAAGCATTC TTATAGGAAA GCTGCACAAG AGCATGTAGC GATCCCAAAC ACGCTTAATC GACAGTTTGC AGTAACTCAA CCAGATCAAG TGTGGTGTGG CGATGTGACG TATGTTTGGG TCGGTAATCG TTGGGCATAT TTAGCCGTTG TTTTAGACTT ATTTTCCCGC AAACCTGTTG GGTGGGCTTT GTCATTATCG CCTGACAGCG AGCTGACCTC TAAAGCCTTG AAAATGGCAT TTGAGTTAAG GGGGAAACCT GAGAATGTGA TATATCACAG CGACCAAGGT TCACATTACA CAAGCTTGAA ATTCAGACAG TTATTATGGC GTCTTCAGAT TGAGCAAAGC ATGAGTCGTC GCGGGAATTG TTGGGATAAC GCACCAATGG AGCGTTTCTT TAGAAGTTTG AAATCTGAAT GGGTACCCGC AAGTGGCTAT GGGAATTTTA CAGAAGCAGA CAAAGCGATC ACAAATTACA TCACTGGATA TTACAGTGAA ACTAGACCCC ATCAATATAA TGGTGGGTTA ACTCCAAATG AGTCAGAACG TTTATATTGG AATGACTCTA AAACCGTGGC CAATATTACT TGA
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Protein sequence | MHRSSYKYWL KRKEHIDADF TILCSEVKAA HRISNGSAGA RTIAQLVTNK GINLSRYRAR NLMRKLGLLS CQQPKHSYRK AAQEHVAIPN TLNRQFAVTQ PDQVWCGDVT YVWVGNRWAY LAVVLDLFSR KPVGWALSLS PDSELTSKAL KMAFELRGKP ENVIYHSDQG SHYTSLKFRQ LLWRLQIEQS MSRRGNCWDN APMERFFRSL KSEWVPASGY GNFTEADKAI TNYITGYYSE TRPHQYNGGL TPNESERLYW NDSKTVANIT
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