Gene Sfri_0681 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0681 
Symbol 
ID4277222 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp806121 
End bp807368 
Gene Length1248 bp 
Protein Length415 aa 
Translation table11 
GC content46% 
IMG OID638133446 
Productanaerobic c4-dicarboxylate antiporter, Dcu family protein 
Protein accessionYP_749378 
Protein GI114561865 
COG category[R] General function prediction only 
COG ID[COG2704] Anaerobic C4-dicarboxylate transporter 
TIGRFAM ID[TIGR00770] anaerobic c4-dicarboxylate membrane transporter family protein 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGGAGCA TGGGGATCGG CTTTGCTGGC GGTGTCGGAG TGCTGATACT GACAGCTGGA 
CTTGGGCTAA CACCAGGGAC TATCCCGATT GATGTAATCC TAATCATTAT GTCGGTGATC
ACCGCCATTG CAGCCATGCA AGTATCGGGA GGGATGGACT ACCTCGTCTC ACTGGCTGAG
AAATTACTAC GTAAACATCC AAAACAAATT ACCTTTCTAG CACCCGTCGT CACTTATTTC
ATGACACTCT TTGCTGGAAC GGGTCACACA GCATTCTCAA CTTTACCTGT TATTGCAGAA
GTAGCCAAAG AACAAGGTAT ACGTCCATCT CGACCTCTAT CTATCGCAGT TGTAGCATCT
CAAGTCGCCA TTACTGCCTC ACCTATTTCA GCGGCAGTAG TGTTCTTCTC TGGCATCTTA
GAGCCACTTG GAGTGGACTA TTTAGTGCTA TTAGCAGTAT GTATCCCCTC CACTTTTCTC
GCTTGTATGG TCGGGGCCGT AGTAGCCAAT TTAATGGGTA AACCGCTAGC AGAAGATCCG
ATTTACCAAG ACCGTTTGGC TAAAGGATTA ATCAAAAAAC GTGGTGCTAC CCAAATAAAC
ATTAAAGACG GTGCTAAACG TTCAGTGGTG ATTTTTTTAA TGGCTATTGC GGCTGTGATG
ATTTATGCCA CTGCGATTTC CGACAAAGTG GGATTAATTG TTAATCCGGT ATTGCCTCGC
GATTCAGCCA TCATGGTGAT TATGCTAACT GCTGCTGCGG CTATAACGAT TTTTTGTAAA
TTAGACGCTA GCGAAATTTC TAATGCTGCC ACTTTTAAGT CAGGTATGTC TGCCTGTGTC
TGTGTGCTAG GCGTTGCGTG GTTAGGGGAT ACTTTTGTTG CAAACCATAT TGATGAAATC
AAAGACCTTG CAGGAACCTT ACTGCAGAGC CAGCCATGGT TATTGTCGGT AACACTATTC
TTCGCTTCTA TGTTGCTCTA CTCACAAGGG GCCACAACTA AAGCGCTGAT GCCTGCGGCA
TTAGCCATTG GTGTGAGCCC TTTAACTGCC GTTGCCTCTT TTGCTGCTGT GAGTGCGTTG
TTTGTACTAC CTACTTATCC AACGCTACTG GCAGCTGTCG AAATGGATGA CACAGGCTCA
ACTCGAATTG GTAAGGCGGT ATTTAACCAC CCATTCCTCA TCCCTGGTGT AGTGACAATT
GCTACCAGTG TCGCGTTAGC GTTCTTATTT GGCGGCATGA TTATATAG
 
Protein sequence
MGSMGIGFAG GVGVLILTAG LGLTPGTIPI DVILIIMSVI TAIAAMQVSG GMDYLVSLAE 
KLLRKHPKQI TFLAPVVTYF MTLFAGTGHT AFSTLPVIAE VAKEQGIRPS RPLSIAVVAS
QVAITASPIS AAVVFFSGIL EPLGVDYLVL LAVCIPSTFL ACMVGAVVAN LMGKPLAEDP
IYQDRLAKGL IKKRGATQIN IKDGAKRSVV IFLMAIAAVM IYATAISDKV GLIVNPVLPR
DSAIMVIMLT AAAAITIFCK LDASEISNAA TFKSGMSACV CVLGVAWLGD TFVANHIDEI
KDLAGTLLQS QPWLLSVTLF FASMLLYSQG ATTKALMPAA LAIGVSPLTA VASFAAVSAL
FVLPTYPTLL AAVEMDDTGS TRIGKAVFNH PFLIPGVVTI ATSVALAFLF GGMII