| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0679 |
|---|
| Symbol | |
|---|
| ID | 4277220 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 803045 |
|---|
| End bp | 805054 |
|---|
| Gene Length | 2010 bp |
|---|
| Protein Length | 669 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638133444 |
|---|
| Product | fumarate reductase flavoprotein subunit |
|---|
| Protein accession | YP_749376 |
|---|
| Protein GI | 114561863 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
|---|
| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAACTTA TTTATACAGA CTCATTAATC ATTGGTGCCG GGCTAGCAGG CCTTAGAGTA
GCCATTGCCA CCAAAGAACG CGGCCTAGAC ACACTGGTAT TATCGCTTAT TCCGGCAAAA
CGTTCACATT CCGCGGCTGC TCAAGGCGGT ATGCAAGCAA GCCTTGGCAA CACAGTTAAA
GGTATGGGTG ACAACGAAGA CATACATTTT CAGGATACGG TAAAAGGGTC TGACTGGGGT
TGTGACCAAG ATGTGGCACG TATGTTTGCC CATTGCGCCC CCAAAGCCAT ACGTGAACTG
ACAAACTGGG GTGTGCCTTG GTCTAGAATT TCTGCTGGTC CACGCGATGT AATAATGAAT
GCAAAAAAGG TGACGTTACA TGAAGCAGAA GAAGCTCATG GCCTCATCAA TGCTCGAGAT
TTTGGCGGCA CCAAAAAATG GCGAACATGC TATACCGCCG ATGGTACTGG CCACTCATTA
TTGTATGCGG TAGATAACCA AGCAATATCG ATGGGTATTC CGGTACACGA AAGGATTGAA
GCCTTATCAC TGATCCATGA TGGTAAGCGT TGCCACGGAG TAATTGCACG TTGTTTAGTG
ACCGGAGAGC TGCGCGCCTA TGTGGCTAAA TCAACTACGA TTGCGACTGG AGGTTACGGC
AAAATTTATG AAATATCGAC TAATGCCACT ATCTGCGAAG GTATAGGCCA AGCGTTAGCA
CTCGAAACTG GCGTCGCGAC ATTAGGCAAT ATGGAAGCGG TACAGTTTCA TCCGACAGCC
ATCGTCCCAG CAGGAATTCT CACCACTGAA GGTTGTCGCG GTGACGGCGG CATACTACGC
GATAAAGACG GTCATCGCTT TATGCCAGAC TACGAGCCAG AGAAAAAGGA ACTCGCTTCC
CGTGATGTGG TATCTCGCCG CATGACCGAA CATATTCGCA AAGGTAAAGG AGATGACAGT
CCTTACGGGC CACATCTCTG GTTAGATATA ACCATTTTAG GTCGTGAGCA TATTGAAACC
AATCTGCGCG AAGTGAAAGA AATTTGTGAA TATTTTCTTG GAATCGATCC CTGCAAAGAG
TGGATCCCTG TAAGACCTAC CCAGCATTAT TCTATGGGCG GCGTTCGTAC TAATGCCACC
GGTGAAAGCC CACAACTTAA AGGACTATTT AGTGTTGGAG AAGCTGCATG CTGGGATATG
CATGGTTTTA ATCGTTTAGG TGGTAATTCT GTGGCAGAAA CCGTAGTAGG CGGCATGATC
ATCGGTAAGT ATGTAGCCGA TTTTTGTGAA CAAAATGCCT TAGAAATAGA TACTGCCCTT
ACCCAAAAAT TTCTCGATAA GTTACAAAAT GAAATCGATA ACTTAGTCGA TGGTAAAGGT
ACAGAGAACC CCTTCGAAAT AAAAAAAGAA ATGCAACGTA TCATGATGAA TTACGTCGGC
ATCTTTCGAA ATGGCCCTGA ACTAGACAAG GCTATAGCCG AGCTTAAAGC ATTACTTCTA
CGCGCAAAAA ATCTAGGACT TAAGTGTAAA AAACGTCATT CAAATCCTGA ATTAGTCGAA
GCTCTGCGCG TCACCAGAAT GTTGAAAGTA GCCTTAACTG TTGCTTGTGG GGCTGCTGCA
CGCACCGAAA GCCGTGGAGC CCACTCGAGA GAAGATTATC CACAACGCAA TGATAAAGAT
TGGCTAAACC GTACATTGGC TACCTGGCCA AATGACGAGT CATTAGAACC CGTTTTACAT
TATGAGAAGC TCGATGTAAT GAAAATGGAG TTACCTCCTG GATACCGCGG TTACGGCAAC
GATAACAACA TAGCCCATCC CGATACAGAA AAACGAACTC AAGAAATAAA CAAAATAACG
GCAGAACTTG GCGACGCCCC AGATAGGCAT GCACTTCAGC AAGCATTGAT GCCATATACG
CTACCTAGCC ATCTACAACC AGCTAATGAA CGTCTTAGCG ATACATTAGC AGTCATACCA
TCTCAACCGG TAGGAAATAA ATCATTATGA
|
|---|
| Protein sequence | MKLIYTDSLI IGAGLAGLRV AIATKERGLD TLVLSLIPAK RSHSAAAQGG MQASLGNTVK
GMGDNEDIHF QDTVKGSDWG CDQDVARMFA HCAPKAIREL TNWGVPWSRI SAGPRDVIMN
AKKVTLHEAE EAHGLINARD FGGTKKWRTC YTADGTGHSL LYAVDNQAIS MGIPVHERIE
ALSLIHDGKR CHGVIARCLV TGELRAYVAK STTIATGGYG KIYEISTNAT ICEGIGQALA
LETGVATLGN MEAVQFHPTA IVPAGILTTE GCRGDGGILR DKDGHRFMPD YEPEKKELAS
RDVVSRRMTE HIRKGKGDDS PYGPHLWLDI TILGREHIET NLREVKEICE YFLGIDPCKE
WIPVRPTQHY SMGGVRTNAT GESPQLKGLF SVGEAACWDM HGFNRLGGNS VAETVVGGMI
IGKYVADFCE QNALEIDTAL TQKFLDKLQN EIDNLVDGKG TENPFEIKKE MQRIMMNYVG
IFRNGPELDK AIAELKALLL RAKNLGLKCK KRHSNPELVE ALRVTRMLKV ALTVACGAAA
RTESRGAHSR EDYPQRNDKD WLNRTLATWP NDESLEPVLH YEKLDVMKME LPPGYRGYGN
DNNIAHPDTE KRTQEINKIT AELGDAPDRH ALQQALMPYT LPSHLQPANE RLSDTLAVIP
SQPVGNKSL
|
|---|
| |