| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0667 |
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| Symbol | |
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| ID | 4278188 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 778798 |
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| End bp | 779772 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638133426 |
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| Product | pseudouridine synthase, RluA family protein |
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| Protein accession | YP_749365 |
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| Protein GI | 114561852 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0233551 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACAAG AGATTAATCT AAAAAGCGAG ATAACAGCAA TACAAACCGG TCTGAGATTA
GACCAAGCAT TAGCTGGTTT GTTCCCTGAC TACTCGCGCA CACGCATCAA GGAATGGATC
CTATCTGGTG CAATTACTAT TGACGGTATC ACAGTCGACA AGCCACGGGA AAAGGTTTTC
GAGTCTCAGT TGGTAGAAGT TACGGCAACA CTTGAAGAAG AAGTGAGTGC TAAAGCGCAA
AATATCGACT TAAATATTGT TTATGAAGAC GACCATATTC TTGTCATTAA CAAGCAAGCT
GGTTTAGTTG TTCATCCTGG TGCTGGTAAC GCAGACGGCA CATTGATGAA TGCTTTATTA
TATCATTGTC CAGATATTGA ACATGTACCA AGAGCGGGTA TTGTTCATCG TTTAGATAAA
GACACTACAG GGCTAATGGT TGTCGCTAAA ACAGTTGAGG CACAAACACA TTTGGTTGCC
GCATTACAGG CGCGTGATAT TGTTCGTGAG TATGAAGCGA TTGTATTAGG CACTATGACG
GCTGGTGGCA CGGTTGATGA ACCTATTGAA CGTCACGCAA CTAGACGTAC TCAAATGGCC
GTTATCCATG GTGGTCGTCC ATCGGTGACT CATTATCGAG TGTCTGAAAA GTTCCGAGCT
CACACGCGTT TACGTTTGCG TCTGGAATCT GGTCGTACTC ACCAAATTCG TGTTCATATG
GCACACATTG GCCATGAGTT GGTTGGCGAT CCGGTTTATG GTGGTCGTCC TCGTCCGCCT
AAATCTGCTA GCCCAGAGTT TTTTGAATTA CTCAAAAACT TTAAGCGCCA AGCTTTACAC
GCAGTGCGTT TAGAGCTTGC TCATCCATTT ACCTGTGAAA TCATGACTTG GCATGCGCCG
ATCCCTGATG ACATGGTTGA GCTGACAAAA GCACTACGAG TCGATACTGA GCTTAATCCG
ATAGTGTATT TATAA
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| Protein sequence | MTQEINLKSE ITAIQTGLRL DQALAGLFPD YSRTRIKEWI LSGAITIDGI TVDKPREKVF
ESQLVEVTAT LEEEVSAKAQ NIDLNIVYED DHILVINKQA GLVVHPGAGN ADGTLMNALL
YHCPDIEHVP RAGIVHRLDK DTTGLMVVAK TVEAQTHLVA ALQARDIVRE YEAIVLGTMT
AGGTVDEPIE RHATRRTQMA VIHGGRPSVT HYRVSEKFRA HTRLRLRLES GRTHQIRVHM
AHIGHELVGD PVYGGRPRPP KSASPEFFEL LKNFKRQALH AVRLELAHPF TCEIMTWHAP
IPDDMVELTK ALRVDTELNP IVYL
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