| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0622 |
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| Symbol | nrfA |
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| ID | 4278422 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 725629 |
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| End bp | 727020 |
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| Gene Length | 1392 bp |
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| Protein Length | 463 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638133379 |
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| Product | cytochrome c552 |
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| Protein accession | YP_749320 |
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| Protein GI | 114561807 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3303] Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit |
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| TIGRFAM ID | [TIGR03152] formate-dependent cytochrome c nitrite reductase, c552 subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000137875 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGTAA AATCAATTGC ACTGAGTGCA GTGATTGCAA CCAGTTTTTT AGCCGCTGGC
GCAATGGCGA GTGAGAAAAC CGAACCTCGT AATGAAGTTT ATAAGGATAA ATTCTCTAAA
CAGTACGACA GCTGGCATGC TACTGATGAA AGCAAAGAAG TTGTCGATAT GTTAGAAAAA
GTACCTAGCC TAGTTGTTTT ATGGGCTGGT TACGGTTTTG CTAAAGATTA CAATGCTCCA
CGTGGTCATA TGTATGCGGT AACTGACGTA ACGAATACAT TGCGTACTGG TGCACCAAAA
AATGCTGAAG ACGGTCCAAT GCCTATGGCA TGTTGGAGCT GTAAAAGCCC TGACGTACCT
CGCGTGATTG AAGAGCAAGG TGAAGATGGT TACTTTAGCG GTAAGTGGGC TAAAGGCGGA
CCTGAAATCG TTAATGTTCT TGGTTGTGCC GATTGTCATG AAAAAGGCTC ATCTAAGTTA
CGTATGTCAC GTCCGTTTGC TGAACGCGCC ATGACAACAT TGAATACTCC ATTTGATAAA
GCTTCTCGTA AAGACAAGCA GTCAATGGTG TGTGCTCAAT GTCACGTTGA ATACTATTTC
GAGAAAACAG CAGAACGTCC TGGTTTTGTT AAATTCCCTT GGGATATGGG TACCACTGTT
GAGCAAATGG AAGTGTATTA CGACAGCATG GAGTTCTCTG ATTGGACTCA CGCAGTGTCT
AAAACACCTA TGCTAAAAGC ACAACACCCT GGTTATGAAA CTTGGAAGTT GGGTGTTCAC
GGTCAAAATA ACGTGAGCTG TGTTGATTGT CATATGCCTA AAGTGACTAA CGACAAAGGC
CGTAAATTTA CTGATCATAA AGTGGGTAAC CCGTTTGATC GCTTTGAAGA AACCTGTGCA
ACTTGTCACA GCCAAAGCAA AGAGTTTATG GTTAAGCAAG TTGAAGAAAG CAAGCAGAAA
GCACAAGACT TAAAAGCACG TGTTGAAACT CAATTAGTTA AAGCTCACTT TGAAGCTAAA
GCTGCGTGGG ATGCTGGCGC AACTGAAGTT GAAATGAAGC CAATCTTAAT GGATATTCGT
CACTCACAAT GGCGTTGGGA TTATGCGACT GCATCTCATG GTGCATCATC ACATGCTCCT
GCTGAAGTAT TACGTATTCT AGGAACTTCA TTGGATAAAG CTGCTGATGC CCGTGTTAAA
TTGGCTCAGC TATTAGGTGC TAAGGGTGTT AAGCAACCAA TTGCATATCC TGACACTTCA
ACTAAAGCAA AAGCACAAGC CGCTTTAGGC ATGAACATGA AAACCATGAA TGCTGAAAAA
GCTGAGTTTA AGAAAACACT TGTACCTAAG TGGAAAGAAG AAGCTAAAAA GCGTGAAGCG
ACTTACAAAT AA
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| Protein sequence | MNVKSIALSA VIATSFLAAG AMASEKTEPR NEVYKDKFSK QYDSWHATDE SKEVVDMLEK
VPSLVVLWAG YGFAKDYNAP RGHMYAVTDV TNTLRTGAPK NAEDGPMPMA CWSCKSPDVP
RVIEEQGEDG YFSGKWAKGG PEIVNVLGCA DCHEKGSSKL RMSRPFAERA MTTLNTPFDK
ASRKDKQSMV CAQCHVEYYF EKTAERPGFV KFPWDMGTTV EQMEVYYDSM EFSDWTHAVS
KTPMLKAQHP GYETWKLGVH GQNNVSCVDC HMPKVTNDKG RKFTDHKVGN PFDRFEETCA
TCHSQSKEFM VKQVEESKQK AQDLKARVET QLVKAHFEAK AAWDAGATEV EMKPILMDIR
HSQWRWDYAT ASHGASSHAP AEVLRILGTS LDKAADARVK LAQLLGAKGV KQPIAYPDTS
TKAKAQAALG MNMKTMNAEK AEFKKTLVPK WKEEAKKREA TYK
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