Gene Sfri_0612 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0612 
Symbol 
ID4278534 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp715614 
End bp716294 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content44% 
IMG OID638133369 
Product2OG-Fe(II) oxygenase 
Protein accessionYP_749310 
Protein GI114561797 
COG category[S] Function unknown 
COG ID[COG3128] Uncharacterized iron-regulated protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.240573 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTGTTA TTGAACAAAT TCTCTCGAAA CAGGATGTCG GTGCTTATCG TCAGCAACTG 
GCTGAATGTC CGTGGGGAGA CGGTCGTAAA ACCGCAATGG GAATGGCGGC GTCGGTTAAA 
AATAACAATC AAGCAGATGC ACAACACGCT AATGTGCGCC AACTAGCTAA TCAACTATTG 
GCGCGTATTG GCGAAACGCC TAAAATTGTA TCAGCGGCGT TACCGCATAA AATATTTCCG 
CCGTGCTTTA ATCGTTATAA CGAAACTGAA GAGTATGGTT ACCATGTTGA TGCAGCCATC 
ATGCGGATCC CTAATACCTC AGAAGTGATC CGTAGTGATG TATCAATGAC GGTATTTTTG 
AGTGAACCCG AAGAGTATGA CGGTGGTGAG TTAGTTATTG CCACCGAATT TGGCCAGCAG 
CAAATTAAGT TACCTGCAGG ATACGCCGTA GTATACCCGT CGAGTAGTTT GCATAAAGTG 
ACTGCAGTAA CTCGAGGGCA ACGCATTGCA GCTATTACGT GGATGCAAAG TATGGTGGCC 
GATGTGACTT TACGCCAAAC CTTGTATCAG CTCGATCAAA GTATTCAAAA TTTGATCAAA 
GCCAACAACA CTGACCGCGC TGAGCTAGAT AATCTACATA ATGTGTATCA CAATTTAATT 
AGACAGTTTA CCCAGCTGTA A
 
Protein sequence
MIVIEQILSK QDVGAYRQQL AECPWGDGRK TAMGMAASVK NNNQADAQHA NVRQLANQLL 
ARIGETPKIV SAALPHKIFP PCFNRYNETE EYGYHVDAAI MRIPNTSEVI RSDVSMTVFL 
SEPEEYDGGE LVIATEFGQQ QIKLPAGYAV VYPSSSLHKV TAVTRGQRIA AITWMQSMVA 
DVTLRQTLYQ LDQSIQNLIK ANNTDRAELD NLHNVYHNLI RQFTQL