| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0603 |
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| Symbol | |
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| ID | 4278525 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 701982 |
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| End bp | 702863 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638133360 |
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| Product | 23S rRNA pseudouridine synthase F |
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| Protein accession | YP_749301 |
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| Protein GI | 114561788 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.10967 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGAAT CTGCAACCCG TCTAAATAAG TACATCAGTG AGAGTGGTAT TTGCTCACGT
CGTGAAGCAG ATCGCTATAT TGAGCAAGGT AATGTTTTTA TCAATGGTAA ACGCGCCAAA
ATTGGTGATA GCGTCGAATT TGGCGATAAA GTCAAAGTGA ATGGTCATGA TATAGCCCCC
CGAGACGAAG CCGATCTGGT TTTTATTGCC CTTAATAAAC CGGTAGGTAT TGTTAGTACC
ACCGAAAATA CCGAACGCGA TAATATTGTT GATTTTGTTA ATCACAGCGA ACGAGTATTT
CCAATTGGTC GTTTAGACAA AGATTCACAA GGGTTAATCT TTCTTACCAG CAATGGTGAC
TTAGTCAATA AAATCCTCCG CGCAGGCAAC AATCACGACA AAGAATATGT GGTTACGGTT
AACAAGCCGA TCACTGAAGC ATTTTTACAA GGTATGCGCG CCGGCGTGCC GATGTTAGGT
GTCATCACTA AAAAATGTAA AGTGGAACAA GTTTCAACGT TCGTATTTAA AATAATTCTA
GTTCAAGGGC TTAATCGTCA AATTCGTCGA ATGTGTGAAC ATTTCAACTT TGAAGTGACC
AAGCTGGAAC GTCAATCAAT TATGAATGTG TCGCTTAAAG GACTGCCTGT AGGAGAGTGG
CGTGATTTGG ATGAACAAGA ACTCAGCACG CTAATGAAGT TAATTGAACA TTCATCTTCA
GAGGTTAAAA ACGCGCCCAA AAAAGCTAAG AAAAAGCCAA CCCAAAGCTT ACGAGATAAA
ATTGAAGGCC CAGAACACTT TATGCAAGGT CGAGGTGCTA AACCTAAAAA GCCGGCAGCG
AATAAAGGTA AGCCAAGTCA TTCAAGAAAA CCTAAACGTT GA
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| Protein sequence | MSESATRLNK YISESGICSR READRYIEQG NVFINGKRAK IGDSVEFGDK VKVNGHDIAP
RDEADLVFIA LNKPVGIVST TENTERDNIV DFVNHSERVF PIGRLDKDSQ GLIFLTSNGD
LVNKILRAGN NHDKEYVVTV NKPITEAFLQ GMRAGVPMLG VITKKCKVEQ VSTFVFKIIL
VQGLNRQIRR MCEHFNFEVT KLERQSIMNV SLKGLPVGEW RDLDEQELST LMKLIEHSSS
EVKNAPKKAK KKPTQSLRDK IEGPEHFMQG RGAKPKKPAA NKGKPSHSRK PKR
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