Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0590 |
Symbol | |
ID | 4278759 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 684488 |
End bp | 687922 |
Gene Length | 3435 bp |
Protein Length | 1144 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 638133348 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_749289 |
Protein GI | 114561776 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.851066 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATAGTT TTTTCAGTTT GATGAGCAAC ACCGTATTGT TACTGGCACT TGTCGTCATT TATGATGCCA TAAAATTACA AAAAATAGCC CCCAAGAAAT ATGGAAATGT CTTGAGTGGG ATTTTTATTG GAATGATCGC AATTTGTGTC ATGAACAATC CTTGGGAGCT AAGGCCGGGG ATTTTTTTTG ACACTCGCTG GGTACTGTTA AGTTTAAGCG GGCTATTTTT TGGTTTTATC CCGACATTGA TTGCCACGAT ACTCGCCGCT TGTTTCCGTC TTTATCAAGG CGGTGCCGGT TTATACGTTG GTACTTTAAT TATTTTCATC AGCTCTGCCA TTGGGTTGGG CTGGCGATAC TGGATGAAGT CTGCAAACAA ACAGCCCAAT TGGCAAAACT TATTGGCCAT GGGCTTTGTC GTGGAGATTG GCGTTTTGCT GTGTTTATTA CTCATGCCAG TGGCAGATAA ATACGACATT ATTCTCACCA TTAGTCCGAC ATTATTCACT GTTTATACAT GTGGCACTAT GTTAATTGGA TTATTACTAA AACAGCATCA ACAAAGGCAA CAAATATCTC AAGAATTACA TCATCACAAA AACCTCCTCG AAACCGAGAA AAACCTGTTA CAAAGCATTA TTGATGGTAT TCCCGATATC ATTTTTTACA AATCGGCCGA CGGGGTTTAT TTAGGTTGTA ACAAAGCATT CTCTGAAGCT CTAAAACTCA ACCCCGAAGA TATTAAACAT AAGACAGACT ATGACTTATT TGACCGTCAA CAGGCAGATA GCTTTATCAA AGCCGATCGT TTTGTTTTAC AAGAAAACCA GCCGTGGATG GATGAAGAAT GGATAACGAC ACCTGATGGT ATAGCACATA TTTTTAAAAC TCATAAAACA CCTTTTGTTG ATTCGTCCGG AGATATTCAG GGAATTGTGG GCGTAAGTAG AGATATGGCC GACAGAAAAC TCATTGAAGA ACAGTTACGT CGCAGTGAAA GTACTTATCG TAATATTATC AGTACTGCGC AAGATGGCTT TGTTATTGTA TCGGTGGACG GAAAGATAAT TGAGTCGAAT CAGAGTTTCG CTGATATGAC CGGTTATACA CTCGACGAGC TATTCAATAA ACCTATTGGG GATATCGAAA CCAGTGAAAA CCACCAGTTT TCAACTCAAA ATATTATTAC AGCCAAGCAA GTAAAGGCGA TTCATTATAC TTCTCAACAC AAACATAAAT TGGGCTATTT ATTTCATGTT GAGGTGAACA TCAGCTTTTG GGATGGTGAT GATGGAATGT TCTTCTGCTT TATTAAAGAC ATTTCACAGC GCATAAATGC TGAACAAAAA CTGCTTCTGA GTGAGTCTAA ATTCAGGCAC ATTTTCGAAA ATATACCCTC AATTTCAGTC CAAGGTTACG ATAAAAACCG TTCGGTCATT TTTTGGAACC AGGCCAGTGA AAAGCTTTAT GGATATACAA AAGAACAAGC ATTAGGGAAA AAGTTAGAAG ATCTCATTAT TCCCCCTCCA TACAGAGAAC ATGTGATCAA TAACGTTAAT GCATGGATTA ATGAAGGGGT TCCTATTCTT GCAGAAGAAT TACTCCTGCA ACGGGCAGAT GGTAGCAATG TAGCAGTTTA TTCGTCTCAT ACATTAATAA ACAACACTGA TAATGAAGCA GAAATGTACT GCATTGATAT CGATTTGAGC GCCCAAAAAA AGGCTGAGGA ACAAGCGCTT ACACTGTCAC AAGCAATAGA GCAAAGCCCT ATATCAATGA TATTAACCAA TATCGATAGC AAAATTGAAT ATGTGAATAG TGCCTTTGAA AAAATTTCTG GCTACGCCGC AAGTGAAGTT ATTGGCCAGT CAGCCAGCAT GCTTAAATCT GGTTTAACCC CAAAATCACT TTATAAACAA TTATGGGATG CGATTTCTAC TGGGCATGCA TGGCAGGGCG AGTTGCAGAA TAGAAAGAAA AACGGTGATA TTTTTTGGGA ACATGCCCAT ATCGCACCCA TTTTTGACAA TGCAGGCGTC ACTAAGCACT ATTTAGCATT GAAACAAGAT GTCACCCAAT ACAAACAACA AGAAGAAAAA ATACTTCACC AAGCTCATTA CGATAGCTTA ACAGGCTTGC CAAATAGACT GCTGTCACTT GATAGATTAT CGCAAATGCT CAAAGACGCC CATCGAGCAA AAAATAACGT GGCGGTACTG TTTTTAGATT TAGACGATTT TAAAAAGGTT AATGACACCA TGGGTCACTC TGTTGGTGAT GAACTGTTGA TCCAAGCTGC GGTTCGGTTA AAGAATACCA TTAGAGAAAG TGATGTTGTG GGGAGATTGG GTGGTGATGA ATTTATCATT ATACTGAGCA ATATTAATGA ACCCATTGAA GTTGAAATTA TTGCCAGTAA GCTACTCGAG CAATTTTACC AACCTTTTAG GCTCGAAAAC CGTGAGTTAG TGTCAACCAT CAGTATTGGT ATTGCCCTTT ACCCGCTTGA CAGTGAAGAC CCCAAAGAAT TGCTAAGACA AGCAGATTCA GCCATGTACC ATTCAAAAGA TCGCGGCAGA AATACCTATA ACTTCTATAC ACATCAAATG AACCACGATA TGGATAGGCG CTTGAAAATT GAAGAGCAAT TACGCAGTGC ATTGAAGCAA AAAGAATTCG AGGTTTACTT TCAACCCTTT GTGGACATCA AGAGTCGTAA AATCATCGGC GCGGAAGCTC TTTTACGTTG GAATAATGCT TTGCTCGGTC AAGTGACTCC TGATGAGTTT ATCCCTATTG CAGAACAAAC AGGACTCATT GTCTCAATTG GCCAATATGT TATCGAGGTT GCATTTGCTA CAGCCAAAAA GTGGCAACAA ACTTATAATC CTTACTTTAA AATTGCCATT AATGTTTCCC CGAAACAATT CAGGGAAAAT ACCTTTGTTG ATATGCTTAA CATTCAGCTA GATAAACACC AAATTCATGC CAGCACTATA GAGCTTGAAA TTACTGAAGG GGTATTACTC AGTAGCGATG CAGTCATCGA CAGCAACTTA ATATCCATTA ACGATATTGG TGTCAGTATT TCAATGGACG ATTTCGGTAC CGGATATTCG TCGCTCAGTT ACCTGCGCAG TTACCCATTC AATACCTTAA AAGTAGATAA AAGTTTTATT AACGATATAA CAGTCGATCC TGGGGATCTA GAACTTGTTG GTGCGGCGAT CGCTATGGGG CATGGGCTTA ATTTAACGGT CGTGGCAGAA GGCGTTGAAA CAGAAGAGCA GTATCATCTG CTTAATGCAT TGAAATGTGA TTACGGCCAA GGTTACTTAT TTAGTAAACC ATTACCCCAA GCGGCATTTG AAGCGCTTTT ACTGAAACAA GCAAAAAATG AAAAAACCAA TAAGAGATCC TCAATAAGAC GCTGA
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Protein sequence | MDSFFSLMSN TVLLLALVVI YDAIKLQKIA PKKYGNVLSG IFIGMIAICV MNNPWELRPG IFFDTRWVLL SLSGLFFGFI PTLIATILAA CFRLYQGGAG LYVGTLIIFI SSAIGLGWRY WMKSANKQPN WQNLLAMGFV VEIGVLLCLL LMPVADKYDI ILTISPTLFT VYTCGTMLIG LLLKQHQQRQ QISQELHHHK NLLETEKNLL QSIIDGIPDI IFYKSADGVY LGCNKAFSEA LKLNPEDIKH KTDYDLFDRQ QADSFIKADR FVLQENQPWM DEEWITTPDG IAHIFKTHKT PFVDSSGDIQ GIVGVSRDMA DRKLIEEQLR RSESTYRNII STAQDGFVIV SVDGKIIESN QSFADMTGYT LDELFNKPIG DIETSENHQF STQNIITAKQ VKAIHYTSQH KHKLGYLFHV EVNISFWDGD DGMFFCFIKD ISQRINAEQK LLLSESKFRH IFENIPSISV QGYDKNRSVI FWNQASEKLY GYTKEQALGK KLEDLIIPPP YREHVINNVN AWINEGVPIL AEELLLQRAD GSNVAVYSSH TLINNTDNEA EMYCIDIDLS AQKKAEEQAL TLSQAIEQSP ISMILTNIDS KIEYVNSAFE KISGYAASEV IGQSASMLKS GLTPKSLYKQ LWDAISTGHA WQGELQNRKK NGDIFWEHAH IAPIFDNAGV TKHYLALKQD VTQYKQQEEK ILHQAHYDSL TGLPNRLLSL DRLSQMLKDA HRAKNNVAVL FLDLDDFKKV NDTMGHSVGD ELLIQAAVRL KNTIRESDVV GRLGGDEFII ILSNINEPIE VEIIASKLLE QFYQPFRLEN RELVSTISIG IALYPLDSED PKELLRQADS AMYHSKDRGR NTYNFYTHQM NHDMDRRLKI EEQLRSALKQ KEFEVYFQPF VDIKSRKIIG AEALLRWNNA LLGQVTPDEF IPIAEQTGLI VSIGQYVIEV AFATAKKWQQ TYNPYFKIAI NVSPKQFREN TFVDMLNIQL DKHQIHASTI ELEITEGVLL SSDAVIDSNL ISINDIGVSI SMDDFGTGYS SLSYLRSYPF NTLKVDKSFI NDITVDPGDL ELVGAAIAMG HGLNLTVVAE GVETEEQYHL LNALKCDYGQ GYLFSKPLPQ AAFEALLLKQ AKNEKTNKRS SIRR
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