| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0590 |
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| Symbol | |
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| ID | 4278759 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 684488 |
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| End bp | 687922 |
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| Gene Length | 3435 bp |
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| Protein Length | 1144 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638133348 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_749289 |
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| Protein GI | 114561776 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.851066 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATAGTT TTTTCAGTTT GATGAGCAAC ACCGTATTGT TACTGGCACT TGTCGTCATT
TATGATGCCA TAAAATTACA AAAAATAGCC CCCAAGAAAT ATGGAAATGT CTTGAGTGGG
ATTTTTATTG GAATGATCGC AATTTGTGTC ATGAACAATC CTTGGGAGCT AAGGCCGGGG
ATTTTTTTTG ACACTCGCTG GGTACTGTTA AGTTTAAGCG GGCTATTTTT TGGTTTTATC
CCGACATTGA TTGCCACGAT ACTCGCCGCT TGTTTCCGTC TTTATCAAGG CGGTGCCGGT
TTATACGTTG GTACTTTAAT TATTTTCATC AGCTCTGCCA TTGGGTTGGG CTGGCGATAC
TGGATGAAGT CTGCAAACAA ACAGCCCAAT TGGCAAAACT TATTGGCCAT GGGCTTTGTC
GTGGAGATTG GCGTTTTGCT GTGTTTATTA CTCATGCCAG TGGCAGATAA ATACGACATT
ATTCTCACCA TTAGTCCGAC ATTATTCACT GTTTATACAT GTGGCACTAT GTTAATTGGA
TTATTACTAA AACAGCATCA ACAAAGGCAA CAAATATCTC AAGAATTACA TCATCACAAA
AACCTCCTCG AAACCGAGAA AAACCTGTTA CAAAGCATTA TTGATGGTAT TCCCGATATC
ATTTTTTACA AATCGGCCGA CGGGGTTTAT TTAGGTTGTA ACAAAGCATT CTCTGAAGCT
CTAAAACTCA ACCCCGAAGA TATTAAACAT AAGACAGACT ATGACTTATT TGACCGTCAA
CAGGCAGATA GCTTTATCAA AGCCGATCGT TTTGTTTTAC AAGAAAACCA GCCGTGGATG
GATGAAGAAT GGATAACGAC ACCTGATGGT ATAGCACATA TTTTTAAAAC TCATAAAACA
CCTTTTGTTG ATTCGTCCGG AGATATTCAG GGAATTGTGG GCGTAAGTAG AGATATGGCC
GACAGAAAAC TCATTGAAGA ACAGTTACGT CGCAGTGAAA GTACTTATCG TAATATTATC
AGTACTGCGC AAGATGGCTT TGTTATTGTA TCGGTGGACG GAAAGATAAT TGAGTCGAAT
CAGAGTTTCG CTGATATGAC CGGTTATACA CTCGACGAGC TATTCAATAA ACCTATTGGG
GATATCGAAA CCAGTGAAAA CCACCAGTTT TCAACTCAAA ATATTATTAC AGCCAAGCAA
GTAAAGGCGA TTCATTATAC TTCTCAACAC AAACATAAAT TGGGCTATTT ATTTCATGTT
GAGGTGAACA TCAGCTTTTG GGATGGTGAT GATGGAATGT TCTTCTGCTT TATTAAAGAC
ATTTCACAGC GCATAAATGC TGAACAAAAA CTGCTTCTGA GTGAGTCTAA ATTCAGGCAC
ATTTTCGAAA ATATACCCTC AATTTCAGTC CAAGGTTACG ATAAAAACCG TTCGGTCATT
TTTTGGAACC AGGCCAGTGA AAAGCTTTAT GGATATACAA AAGAACAAGC ATTAGGGAAA
AAGTTAGAAG ATCTCATTAT TCCCCCTCCA TACAGAGAAC ATGTGATCAA TAACGTTAAT
GCATGGATTA ATGAAGGGGT TCCTATTCTT GCAGAAGAAT TACTCCTGCA ACGGGCAGAT
GGTAGCAATG TAGCAGTTTA TTCGTCTCAT ACATTAATAA ACAACACTGA TAATGAAGCA
GAAATGTACT GCATTGATAT CGATTTGAGC GCCCAAAAAA AGGCTGAGGA ACAAGCGCTT
ACACTGTCAC AAGCAATAGA GCAAAGCCCT ATATCAATGA TATTAACCAA TATCGATAGC
AAAATTGAAT ATGTGAATAG TGCCTTTGAA AAAATTTCTG GCTACGCCGC AAGTGAAGTT
ATTGGCCAGT CAGCCAGCAT GCTTAAATCT GGTTTAACCC CAAAATCACT TTATAAACAA
TTATGGGATG CGATTTCTAC TGGGCATGCA TGGCAGGGCG AGTTGCAGAA TAGAAAGAAA
AACGGTGATA TTTTTTGGGA ACATGCCCAT ATCGCACCCA TTTTTGACAA TGCAGGCGTC
ACTAAGCACT ATTTAGCATT GAAACAAGAT GTCACCCAAT ACAAACAACA AGAAGAAAAA
ATACTTCACC AAGCTCATTA CGATAGCTTA ACAGGCTTGC CAAATAGACT GCTGTCACTT
GATAGATTAT CGCAAATGCT CAAAGACGCC CATCGAGCAA AAAATAACGT GGCGGTACTG
TTTTTAGATT TAGACGATTT TAAAAAGGTT AATGACACCA TGGGTCACTC TGTTGGTGAT
GAACTGTTGA TCCAAGCTGC GGTTCGGTTA AAGAATACCA TTAGAGAAAG TGATGTTGTG
GGGAGATTGG GTGGTGATGA ATTTATCATT ATACTGAGCA ATATTAATGA ACCCATTGAA
GTTGAAATTA TTGCCAGTAA GCTACTCGAG CAATTTTACC AACCTTTTAG GCTCGAAAAC
CGTGAGTTAG TGTCAACCAT CAGTATTGGT ATTGCCCTTT ACCCGCTTGA CAGTGAAGAC
CCCAAAGAAT TGCTAAGACA AGCAGATTCA GCCATGTACC ATTCAAAAGA TCGCGGCAGA
AATACCTATA ACTTCTATAC ACATCAAATG AACCACGATA TGGATAGGCG CTTGAAAATT
GAAGAGCAAT TACGCAGTGC ATTGAAGCAA AAAGAATTCG AGGTTTACTT TCAACCCTTT
GTGGACATCA AGAGTCGTAA AATCATCGGC GCGGAAGCTC TTTTACGTTG GAATAATGCT
TTGCTCGGTC AAGTGACTCC TGATGAGTTT ATCCCTATTG CAGAACAAAC AGGACTCATT
GTCTCAATTG GCCAATATGT TATCGAGGTT GCATTTGCTA CAGCCAAAAA GTGGCAACAA
ACTTATAATC CTTACTTTAA AATTGCCATT AATGTTTCCC CGAAACAATT CAGGGAAAAT
ACCTTTGTTG ATATGCTTAA CATTCAGCTA GATAAACACC AAATTCATGC CAGCACTATA
GAGCTTGAAA TTACTGAAGG GGTATTACTC AGTAGCGATG CAGTCATCGA CAGCAACTTA
ATATCCATTA ACGATATTGG TGTCAGTATT TCAATGGACG ATTTCGGTAC CGGATATTCG
TCGCTCAGTT ACCTGCGCAG TTACCCATTC AATACCTTAA AAGTAGATAA AAGTTTTATT
AACGATATAA CAGTCGATCC TGGGGATCTA GAACTTGTTG GTGCGGCGAT CGCTATGGGG
CATGGGCTTA ATTTAACGGT CGTGGCAGAA GGCGTTGAAA CAGAAGAGCA GTATCATCTG
CTTAATGCAT TGAAATGTGA TTACGGCCAA GGTTACTTAT TTAGTAAACC ATTACCCCAA
GCGGCATTTG AAGCGCTTTT ACTGAAACAA GCAAAAAATG AAAAAACCAA TAAGAGATCC
TCAATAAGAC GCTGA
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| Protein sequence | MDSFFSLMSN TVLLLALVVI YDAIKLQKIA PKKYGNVLSG IFIGMIAICV MNNPWELRPG
IFFDTRWVLL SLSGLFFGFI PTLIATILAA CFRLYQGGAG LYVGTLIIFI SSAIGLGWRY
WMKSANKQPN WQNLLAMGFV VEIGVLLCLL LMPVADKYDI ILTISPTLFT VYTCGTMLIG
LLLKQHQQRQ QISQELHHHK NLLETEKNLL QSIIDGIPDI IFYKSADGVY LGCNKAFSEA
LKLNPEDIKH KTDYDLFDRQ QADSFIKADR FVLQENQPWM DEEWITTPDG IAHIFKTHKT
PFVDSSGDIQ GIVGVSRDMA DRKLIEEQLR RSESTYRNII STAQDGFVIV SVDGKIIESN
QSFADMTGYT LDELFNKPIG DIETSENHQF STQNIITAKQ VKAIHYTSQH KHKLGYLFHV
EVNISFWDGD DGMFFCFIKD ISQRINAEQK LLLSESKFRH IFENIPSISV QGYDKNRSVI
FWNQASEKLY GYTKEQALGK KLEDLIIPPP YREHVINNVN AWINEGVPIL AEELLLQRAD
GSNVAVYSSH TLINNTDNEA EMYCIDIDLS AQKKAEEQAL TLSQAIEQSP ISMILTNIDS
KIEYVNSAFE KISGYAASEV IGQSASMLKS GLTPKSLYKQ LWDAISTGHA WQGELQNRKK
NGDIFWEHAH IAPIFDNAGV TKHYLALKQD VTQYKQQEEK ILHQAHYDSL TGLPNRLLSL
DRLSQMLKDA HRAKNNVAVL FLDLDDFKKV NDTMGHSVGD ELLIQAAVRL KNTIRESDVV
GRLGGDEFII ILSNINEPIE VEIIASKLLE QFYQPFRLEN RELVSTISIG IALYPLDSED
PKELLRQADS AMYHSKDRGR NTYNFYTHQM NHDMDRRLKI EEQLRSALKQ KEFEVYFQPF
VDIKSRKIIG AEALLRWNNA LLGQVTPDEF IPIAEQTGLI VSIGQYVIEV AFATAKKWQQ
TYNPYFKIAI NVSPKQFREN TFVDMLNIQL DKHQIHASTI ELEITEGVLL SSDAVIDSNL
ISINDIGVSI SMDDFGTGYS SLSYLRSYPF NTLKVDKSFI NDITVDPGDL ELVGAAIAMG
HGLNLTVVAE GVETEEQYHL LNALKCDYGQ GYLFSKPLPQ AAFEALLLKQ AKNEKTNKRS
SIRR
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