| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0583 |
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| Symbol | lysS |
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| ID | 4278752 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 677097 |
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| End bp | 678599 |
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| Gene Length | 1503 bp |
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| Protein Length | 500 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638133341 |
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| Product | lysyl-tRNA synthetase |
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| Protein accession | YP_749282 |
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| Protein GI | 114561769 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
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| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACTGAAC ACGTACAAGA TGAAAACAAA CTGATTGCTG AACGTCGCGC TAAATTAGAA
CACATTCGCA CCAACTGTCC TGCGAATGCT CATCCAAATA CATGGCAGCG TAGTCATAAA
GCGGCTGAGT TACAGGCACA ATATGGCGAG CAAACTAAAG AAGCGCTAGA AGAGTTAGCT
TTTCAAACCA GTATTGCTGG CCGTGTTATG GCAAAGCGTG GTCCATTTTT AGTGATTCAA
GACGTGTCTG GTCGTATTCA AGCTTATGCT GGTAAGCCAG TACAAGGCGA TTTAAAAGAG
CGTTATCAAG GTTTAGACAT CGGTGACATC ATTGGTGTTA AAGGTCAGCT GCATTTATCT
GGCAAGGGCG ACTTATACGT TAATATGGAA GAATATCAGT TACTGACCAA AGCATTGCGT
CCGTTACCTG AAAAATTCCA TGGTTTAACA GACCAAGAAA CTCGCTACCG TCAGCGTTAC
GTTGATTTGA TCGTTAACGA AGATTCGCGC AATGCCTTTA TTATGCGCTC TAAAGTGGTT
GCCGCAATCC GTAACTTTAT GGTCAAAAAA GAGTTCATGG AAGTTGAAAC CCCAATGATG
CACGTTATTC CTGGTGGTGC TTCTGCGCGT CCATTTGTAA CGCATCACAA TGCATTAGAC
ATGGCTATGT ACTTACGTAT CGCGCCAGAG CTGTACCTTA AGCGTCTAGT GGTTGGTGGT
TTTGAACGTG TATTCGAAAT TAACCGTAAC TTCCGTAACG AAGGTTTGTC ACCACGTCAT
AACCCAGAAT TCACCATGAT GGAATTCTAT ATGGCGTATG CTGATTACAA AGACCTAATG
GACTTAACCG AAGAAATGCT GGGGTCAATT GCTCAAGAAT TATTAGGCAG TACTAGCATG
CCGTATGGTG AAGAAACTGT TGAGTTTGGT GGCGCTTATG CTCGTTTAAG CATGTTAGAA
GCGATTCAGA AATACAATCC TGACAATGCG ACTATTCAAG CTATGACCTA CGAGCAAGTT
AAAGACGTAG AGTTTATGCG CGACTTAGCA TCGAGCCTAG GCATCAAGTT AGAGAAATTC
TGGACTTGTG GTCAATTACT TGAAGAAATC TTCGGTGAAA CTGCTGAAAC TAAGTTAATG
CAACCTACGT TCATTACTGG CTACCCAGCT GATATTTCAC CTTTGGCGCG TCGTAATGAT
AACAATGACT TCATTACCGA TCGTTTTGAG TTCTTTATCG GTGGCCGCGA AGTGGCTAAC
GGCTTTAGTG AGCTTAACGA TGCTGAAGAT CAAGACAACC GCTTTAAAGC GCAAGTTGAT
GCGAAAGATG CTGGCGATGA CGAGGCGATG TTCTATGACG CTGACTACAT TACAGCACTA
GAGCACGGTT TACCACCAAC AGCAGGTCAA GGTATTGGTA TCGACCGTTT AGTGATGCTA
TTCACTAACA CGCATACTAT TCGCGACGTG ATTTTATTCC CAGCGATGCG CCCACAAGCG
TAA
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| Protein sequence | MTEHVQDENK LIAERRAKLE HIRTNCPANA HPNTWQRSHK AAELQAQYGE QTKEALEELA
FQTSIAGRVM AKRGPFLVIQ DVSGRIQAYA GKPVQGDLKE RYQGLDIGDI IGVKGQLHLS
GKGDLYVNME EYQLLTKALR PLPEKFHGLT DQETRYRQRY VDLIVNEDSR NAFIMRSKVV
AAIRNFMVKK EFMEVETPMM HVIPGGASAR PFVTHHNALD MAMYLRIAPE LYLKRLVVGG
FERVFEINRN FRNEGLSPRH NPEFTMMEFY MAYADYKDLM DLTEEMLGSI AQELLGSTSM
PYGEETVEFG GAYARLSMLE AIQKYNPDNA TIQAMTYEQV KDVEFMRDLA SSLGIKLEKF
WTCGQLLEEI FGETAETKLM QPTFITGYPA DISPLARRND NNDFITDRFE FFIGGREVAN
GFSELNDAED QDNRFKAQVD AKDAGDDEAM FYDADYITAL EHGLPPTAGQ GIGIDRLVML
FTNTHTIRDV ILFPAMRPQA
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