| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0579 |
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| Symbol | rumB |
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| ID | 4278520 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 671190 |
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| End bp | 672323 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638133337 |
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| Product | 23S rRNA methyluridine methyltransferase |
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| Protein accession | YP_749278 |
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| Protein GI | 114561765 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAATGTG ATTATTTTGA GCGTGGCGAT TGTTTGTCAT GCCGCAATAT TCAACTACCT
ATGGTTGAGC AAGTGAGTGT AAAGCAACAA CAGTTAATCG ATTTGTTTCG TGGCATTTCA
GTTAAGCAAT GGCTAGCGCC GATATTAAGC GCAGAATCAG GTTTTCGTAA TAAAGCCAAA
ATGGTCGTTT TAGGTGCCGC TCACAAACCT ATTTTAGGTT TGGTTAATCC TAAAGGGGAG
CCGGTCAGTC TATGCGACTG TTCGTTATAC CCTAAAGATA TGCAATTATT GTTACACCGT
TTAGAACGAT TTGTGCAGCA AGCTGGTATA CCGCCTTATC GGGTCGATAA AAGCAAAGGC
GAGCTAAAAT TTATTTTACT GACTCGCAGC CAAAGTAGTG GCCAGTTTAT GCTGCGTTTT
GTATTACGCA GTGATCAAGC CATCGTGAGA ATTGAACGAG AATTACCTCA ATTATTACAA
GAGTTTCCCG AAATTACCTT AGTCTCGGCC AATATTCAGC CAATCCACAT GGCGATTCTT
GAAGGCGAAA GGGAAATATT TTTAACGGAA ACGACACGAT TAGAAGAACA ACTTAATAAT
GTACCGTTGT TTATACGGCC AAAAAGCTTT TTTCAAACGA ATCCTGAAGT CGCCGCCCAG
TTGTATCAAA TAGCGAGGGA GTGGGTTACT GAATTCAAAC CGAACTATAT TTGGGATCTA
TTTTGTGGCG TCGGTGGATT TGGGCTGCAT TGTGCTGACA GCAATATCCG TTTAACTGGG
ATTGAGATCG AATCTGAAGC AATAGAATGT GCCATCTTGT CAGCAACTAA ACTAGGGTTT
ACCCAAGTGG ATTTTAGCGC ACTTGATTCA ACTCATTTTG CCAAAGGACA ATCTGCTCAA
GATAAACCAG ATCTTATTAT TGTAAATCCA CCTCGGCGCG GATTAGGAAA ATCATTATGC
GACTCACTGA GTGAGTTTGC ACCTAAAGCA ATCGTGTATT CTAGTTGTAA TCCACACACC
TTAATGAGCG ATTTAGAGTA CATTACGGGT TATCAAATCA CCAAAGTTCA AATGTTTGAT
ATGTTTCCTC ATACTGATCA TTTTGAAGTA TTGGTTATGC TAGAACAGCT GTAA
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| Protein sequence | MKCDYFERGD CLSCRNIQLP MVEQVSVKQQ QLIDLFRGIS VKQWLAPILS AESGFRNKAK
MVVLGAAHKP ILGLVNPKGE PVSLCDCSLY PKDMQLLLHR LERFVQQAGI PPYRVDKSKG
ELKFILLTRS QSSGQFMLRF VLRSDQAIVR IERELPQLLQ EFPEITLVSA NIQPIHMAIL
EGEREIFLTE TTRLEEQLNN VPLFIRPKSF FQTNPEVAAQ LYQIAREWVT EFKPNYIWDL
FCGVGGFGLH CADSNIRLTG IEIESEAIEC AILSATKLGF TQVDFSALDS THFAKGQSAQ
DKPDLIIVNP PRRGLGKSLC DSLSEFAPKA IVYSSCNPHT LMSDLEYITG YQITKVQMFD
MFPHTDHFEV LVMLEQL
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