Gene Sfri_0574 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0574 
Symbol 
ID4278515 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp667445 
End bp668647 
Gene Length1203 bp 
Protein Length400 aa 
Translation table11 
GC content44% 
IMG OID638133332 
Productaromatic amino acid permease 
Protein accessionYP_749273 
Protein GI114561760 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0814] Amino acid permeases 
TIGRFAM ID[TIGR00837] aromatic amino acid transport protein 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAATTTTA AAACTTTAGG TTCTATTTCG ATTGTCGCGG GAACGGCAAT TGGCGGAGGC 
ATGCTAGCGC TACCATTAGC AACAGCAGCT TTGGGGATGA TCCCCGCATT AATCTTATTA
GTGGTTATTT GGGGTTTATC GGCTTACACC TCGTTACTGA TGTTAGAAAT TAATCTTCAC
AGTGGTGTCG GCGATAACGT CCATGCCATT ACTGGTAAAA CACTGGGCAA AGTCGGCCAA
CTCATTCAAG GAGGCTCATT CCTTAGCTTA TTATTCGCCT TAACCATGGT GTATCTAATG
GGAGGGTCAT CGCTATTAGA AACCCGTTTA CAACCCATCG GCATTAACAT GAGCAACCAA
GTCGCCGTCA TACTTTTTAC GGTTATTTTT GGTGGCTTGA TTGCCATTGG TGTTAAATGG
ATTGATAAAG TATCACGTAT TTTATTTACT TCTATGGTGG TGCTGCTTGT CATTGTGGTG
GCATTTCTAT TACCAGACGT TAATTTAATC AGTGCATTAA ACAATTACTC AACCGATGTG
GCATCGGGCA CCGCTTTACA ACAATTATGG TTAGCAGCTA TCCCGGTAGT ATTCACTTCA
TTTGGTTTCC ACGTGTGTAT TGCCACCATT GTGCGCTACT TAGAGGGTGA TGCTGCATCA
CTTAGAAAAG TGTTATTAAT AGGCTCGACC ATTCCACTGG TTTGTTACAT CCTGTGGTTG
CTCGTAACGC TAGGTTCTTT AGGTGGCGAA ACAGTTCACA GCTTTGGTGG TTCACTGCCT
AAACTGGTTG CTGCTTTACA AGGTTTAGCC CAGTCACACA TTATCAGCCA AGCAATTGAT
CTATTTGCCA ACCTTGCATT GGTGACCTCA TTTTTGGGTG TCACCATGAG CCTATTTGAT
TATGTCGCCG AACTGACCCG AGCTAAAGAT GACGCTGTTG GTCGTGCTAA AACATGGTTA
ATAACATTTA TACCACCACT GTTATGTGCG CTTTACTACC CAGACGGATT TTTCAAAGTG
CTAGGTTTTG CTGCCATTCC ATTGGTGGTG ATGATTATCT ATTTACCCAT TGCGATGGCA
TTAAAGCAAC GCTCACAGCA ATTAGGCGGT TATCAAGTTT CTGGCGGCAC ATTAGGGCTG
ATCGCCGCAG GATTGCTCGG CACATTAATT GTTGTGGCGC AGTTGATGGT AGCATTAGCC
TAA
 
Protein sequence
MNFKTLGSIS IVAGTAIGGG MLALPLATAA LGMIPALILL VVIWGLSAYT SLLMLEINLH 
SGVGDNVHAI TGKTLGKVGQ LIQGGSFLSL LFALTMVYLM GGSSLLETRL QPIGINMSNQ
VAVILFTVIF GGLIAIGVKW IDKVSRILFT SMVVLLVIVV AFLLPDVNLI SALNNYSTDV
ASGTALQQLW LAAIPVVFTS FGFHVCIATI VRYLEGDAAS LRKVLLIGST IPLVCYILWL
LVTLGSLGGE TVHSFGGSLP KLVAALQGLA QSHIISQAID LFANLALVTS FLGVTMSLFD
YVAELTRAKD DAVGRAKTWL ITFIPPLLCA LYYPDGFFKV LGFAAIPLVV MIIYLPIAMA
LKQRSQQLGG YQVSGGTLGL IAAGLLGTLI VVAQLMVALA