| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0572 |
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| Symbol | |
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| ID | 4278513 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 664353 |
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| End bp | 665069 |
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| Gene Length | 717 bp |
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| Protein Length | 238 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638133330 |
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| Product | pseudouridine synthase, Rsu |
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| Protein accession | YP_749271 |
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| Protein GI | 114561758 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACATCAA TGAGATTAAG TCATTATTTG GCTGTATGTG GTGTGGCGTC AAGACGCCAA
GCTGCACGAC TTATCGACAC TGGTCGAGTG AGTATTAATC ATCAATTAGC TAAACACACT
GACCGAGTTA ACTTTTGTGA AATTGAGACA ATTCTAGTAG ATGATAAACC GATCCTTGCT
GTGCAAGATA AACAGTATTG GCTATATCAT AAGCCTGTTG GAATTGATTG CCGTTTATTA
GTTGATGATC CCCACAGCTT ACTGCATGTA TTACCTGAGT TACCAAGGTT GTATCCTGCA
GGGCGTTTGG ATAAAGATTC TCGTGGTTTG CTACTACTCA CTAATGACGG TCAATTAACG
CAAGCGCTAA TGCATCCCGA TTATTATCAT CCTAAGACAT ACGTGGTCCA AGTTGATAAG
CCAATTAGTA CCAGTTTTTT ATCGATGATG GCAAATGGGG TTAGTTATGG TGATGTGCAA
ACTCGATCAT GCGATATTCG GCCATTGAGC TTAACGGCTG AAGAAGACAG GTTTGAGATT
GTATTAACCC AAGGATTAAA TCGACAAATA CGCCGTATGT GTCAAACGTT AGGTTACAAA
GTGATTGATT TAATGCGAAC TCAATTACTC GATATACGTA TTGATGAGCT TGCAGAAAAA
ACAATGCGGC CATTAACGGC CGCAGAGTTA TTGAGTCTTA AACGTGCAGT AAACTGA
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| Protein sequence | MTSMRLSHYL AVCGVASRRQ AARLIDTGRV SINHQLAKHT DRVNFCEIET ILVDDKPILA
VQDKQYWLYH KPVGIDCRLL VDDPHSLLHV LPELPRLYPA GRLDKDSRGL LLLTNDGQLT
QALMHPDYYH PKTYVVQVDK PISTSFLSMM ANGVSYGDVQ TRSCDIRPLS LTAEEDRFEI
VLTQGLNRQI RRMCQTLGYK VIDLMRTQLL DIRIDELAEK TMRPLTAAEL LSLKRAVN
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