Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0568 |
Symbol | |
ID | 4278509 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 658135 |
End bp | 661329 |
Gene Length | 3195 bp |
Protein Length | 1064 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638133326 |
Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
Protein accession | YP_749267 |
Protein GI | 114561754 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism |
COG ID | [COG0506] Proline dehydrogenase [COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAGCGA ATACTATGTT CAAAGCGAGT GAAGTACTGG ACGGCCGCTA CGACAATGCC ACTCTTGAGG AACTGTTTAC TGCAGTGACC AACAATTACA TTGTCGATGA AGAGCAATAC CTGTCTGAAT TAATTAAGCT TGTGCCTTCG TCTGAACAAG ACATTGAGCA AGTGACTCGT CGCGCCCATG AGCTCGTGAG CAAAGTTCGT CAGTTTGAGA AAAAAGGCCT GATGGTTGGT ATTGATGCAT TTTTGCAGCA ATACAGCTTA GAAACAAAAG AAGGCATTAT CTTAATGTGC TTGGCTGAAG CCTTGTTACG TATTCCTGAC GCGGCAACCG CGGATGCGCT TATCCAAGAT AAACTGTCTG GTGCCAAGTG GGATGAACAC CTTAATAAGA GTGAGTCATT ACTGGTTAAC GCCTCAACAT GGGGCTTAAT GCTGACCGGT AAACTGGTTA AGTTAGATCG TAATACTGAC GGTTCGCCAA GTCATATACT TAAACGTCTG GTTAATCGTG TTGGTGAGCC AATGATCCGC CAAGCCATGC TTGCAGCAAT GAAGATCATG GGTAAGCAAT TTGTGTTAGG TGAGGACGTT AAAGAAGCAC TTAAAAATAG TGAAGCTAAA CGTAAGTTAG GTTATACCCA TAGCTATGAC ATGTTAGGTG AAGCAGCATT AACCGCCAAT GATGCGCAAA AGTATTTTAA CGATTACAGC AATGCTATTC GCGATTTAGG CGAACAGCAA TACGATGAAG CGAACTCACC AAGACCCACC ATATCAATCA AACTATCTGC TTTGCACCCT CGTTATGAAG TCGCTAACGA GGATCGTGTA TTAAGTGAAT TATACGACAC AGTTATTAAG CTGATAGTAC AAGCGCGTGA ACTTAACATT GGTATTTCTA TTGATGCTGA AGAAGTTGAC CGTCTTGAAT TGTCATTGAA GTTATTTAAG CAGCTTTATC AGTCAGAAGC CGCTAAAGGC TGGGGCTTAT TAGGCATTGT GGTGCAAGCT TATTCTAAGC GTTGTTTACC GGTGTTGTGT TGGTTGACGC GTCTTGCTAA AGATCAAGGC GATGAAATTC CGCTGCGTTT AGTTAAAGGT GCTTATTGGG ACAGTGAGCT TAAATGGGCA CAACAAGCGG GTGAGCGTGG TTACCCACTC TATACCCGTA AAGCAGGTAC TGACGTGTCA TATCTTGCTT GCGCACGTTA TTTGCTGTCT GAAGCCACCC GTGGTGCGAT TTACCCACAA TTTGCCACCC ATAACGCTCA AACCGTTGCC AGCATTGATG CGATGGCAGG TAATCGTATA TATGAGTTCC AACGTTTACA CGGCATGGGG CAAGAGCTTT ACGACACTAT GCTTGCAGAA AGCGGTGCTA AAGCGGTACG TATCTATGCC CCCATTGGCG CCCATAAAGA CTTACTGCCG TATTTAGTAC GCCGTTTACT TGAAAACGGT GCCAATACCT CATTTGTGCA TAAACTGGTC GACCCTAATA CGCCGATTGA AAGCTTAGTC GTTCATCCAT TGGTGACGCT ATTAGGTTAC AAGTCGTTAG CGAATCAAAA AATTGTTAAA CCTGCTGATA TTTTCGGTGC AGAACGTAAG AACTCTAAAG GATTAAACAT GAACATTATT TCTGAGTCAG AGCCATTTTT TGCTGCACTG GATAAATATA GCGATACTCA ATGGACCGCG GGTCCATTGG TAAACGGTAA AACATTAACG GGTGAAGTAC AAACTGTTGT TAGCCCATAT GATACTTCGC TAACCGTCGG TACCGTGGCT TTTGCAGATG CAAACGCAAT TGAGCAAGCC ATTGCTGGTG CAGATGCTGC TTTTGGTAGT TGGGTTCGTA CGCCTGTTGA AACTCGAGCG AATGCACTAC AGAAATTAGC TGATTTATTG GAAGAAAATC GTGAAGAGCT GATTGTATTA TGTACCCGTG AAGCGGGTAA GAGCATTCAA GACGGCATTG ATGAAGTTCG TGAAGCAGTC GATTTTTGTC GTTACTACGC GGTACAAGCT AAGAAGATGA TGGCTCAGCC TGAATTACTT CCTGGCCCGA CAGGCGAGTT GAACGAACTG TTTTTACAAG GCCGCGGAAT TTTTGTGTGT ATTAGTCCAT GGAACTTCCC GTTGGCGATT TTCTTAGGCC AAGTATCTGC AGCACTTGCC GCGGGGAATA CTGTTATTGC CAAGCCTGCG GAGCAAACCT GTTTAATCGG TTATCGTGCA GTACAACTTG CGCATGAAGC CGGTATTCCT ACCGATGTAT TACAGTTTTT ACCAGGTACT GGCGCTGTTG TTGGTTCTGC AATCACTGCA GATGAACGTA TTGGCGGTGT GTGTTTTACC GGCTCTACTG GCACCGCTAA ATTGATTAAC CGCACTTTGG CAAACCGTGA TGGCGCAATT ATTCCATTAA TTGCTGAAAC CGGTGGTCAA AATGCCATGG TTGTGGACTC AACATCACAA CCAGAGCAAG TTGTTAATGA CGTAGTTTCT TCATCGTTCA CCAGTGCTGG TCAGCGTTGT TCGGCATTGC GAGTCTTATT TTTACAAGAA GATATTGCAG ATCGCGTGAT TGAAGTGATG AAAGGCGCCA TGGAGCAATT AGTGATTGGC AACCCAAGTT CAGTTAAAAC TGACGTGGGA CCAGTGATTG ATGCCACTGC CAAAGCAAAC TTGAATGCCC ACATTGATCA TATCAGCCAG GTCGGCAAGT TAATTAATAA ACTTGAATTA CCAGCGGGTA CTGAAAACGG CCATTTTGTA GCGCCTACAG CCGTTGAAAT TAGTTCTATT AAGTTACTCG AAAAAGAACA TTTTGGTCCT ATTTTGCATG TTATTCGTTA TAAAGCGGCT GATTTGGCAA AAGTGGTTGA TGAAATCAAC AGCACAGGTT TTGGGTTAAC CTTAGGTATT CACAGCCGTA ATGAAGGCCA TGCGCTGTCG CTTGCTGACA AAGTAAACGT AGGTAACGTG TACATTAACC GTAACCAAAT TGGCGCCGTT GTTGGCGTGC AACCATTTGG TGGTCAAGGT TTATCGGGCA CCGGTCCTAA AGCGGGTGGC CCGCATTATT TAACTCGTTT TGTGACCGAA AAAACGCGTA CTAATAACAT TACCGCGATT GGTGGTAATG CGACATTATT GTCACTGGGT GATGCTGAAG AATAA
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Protein sequence | MEANTMFKAS EVLDGRYDNA TLEELFTAVT NNYIVDEEQY LSELIKLVPS SEQDIEQVTR RAHELVSKVR QFEKKGLMVG IDAFLQQYSL ETKEGIILMC LAEALLRIPD AATADALIQD KLSGAKWDEH LNKSESLLVN ASTWGLMLTG KLVKLDRNTD GSPSHILKRL VNRVGEPMIR QAMLAAMKIM GKQFVLGEDV KEALKNSEAK RKLGYTHSYD MLGEAALTAN DAQKYFNDYS NAIRDLGEQQ YDEANSPRPT ISIKLSALHP RYEVANEDRV LSELYDTVIK LIVQARELNI GISIDAEEVD RLELSLKLFK QLYQSEAAKG WGLLGIVVQA YSKRCLPVLC WLTRLAKDQG DEIPLRLVKG AYWDSELKWA QQAGERGYPL YTRKAGTDVS YLACARYLLS EATRGAIYPQ FATHNAQTVA SIDAMAGNRI YEFQRLHGMG QELYDTMLAE SGAKAVRIYA PIGAHKDLLP YLVRRLLENG ANTSFVHKLV DPNTPIESLV VHPLVTLLGY KSLANQKIVK PADIFGAERK NSKGLNMNII SESEPFFAAL DKYSDTQWTA GPLVNGKTLT GEVQTVVSPY DTSLTVGTVA FADANAIEQA IAGADAAFGS WVRTPVETRA NALQKLADLL EENREELIVL CTREAGKSIQ DGIDEVREAV DFCRYYAVQA KKMMAQPELL PGPTGELNEL FLQGRGIFVC ISPWNFPLAI FLGQVSAALA AGNTVIAKPA EQTCLIGYRA VQLAHEAGIP TDVLQFLPGT GAVVGSAITA DERIGGVCFT GSTGTAKLIN RTLANRDGAI IPLIAETGGQ NAMVVDSTSQ PEQVVNDVVS SSFTSAGQRC SALRVLFLQE DIADRVIEVM KGAMEQLVIG NPSSVKTDVG PVIDATAKAN LNAHIDHISQ VGKLINKLEL PAGTENGHFV APTAVEISSI KLLEKEHFGP ILHVIRYKAA DLAKVVDEIN STGFGLTLGI HSRNEGHALS LADKVNVGNV YINRNQIGAV VGVQPFGGQG LSGTGPKAGG PHYLTRFVTE KTRTNNITAI GGNATLLSLG DAEE
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