Gene Sfri_0568 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0568 
Symbol 
ID4278509 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp658135 
End bp661329 
Gene Length3195 bp 
Protein Length1064 aa 
Translation table11 
GC content44% 
IMG OID638133326 
Productbifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_749267 
Protein GI114561754 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGCGA ATACTATGTT CAAAGCGAGT GAAGTACTGG ACGGCCGCTA CGACAATGCC 
ACTCTTGAGG AACTGTTTAC TGCAGTGACC AACAATTACA TTGTCGATGA AGAGCAATAC
CTGTCTGAAT TAATTAAGCT TGTGCCTTCG TCTGAACAAG ACATTGAGCA AGTGACTCGT
CGCGCCCATG AGCTCGTGAG CAAAGTTCGT CAGTTTGAGA AAAAAGGCCT GATGGTTGGT
ATTGATGCAT TTTTGCAGCA ATACAGCTTA GAAACAAAAG AAGGCATTAT CTTAATGTGC
TTGGCTGAAG CCTTGTTACG TATTCCTGAC GCGGCAACCG CGGATGCGCT TATCCAAGAT
AAACTGTCTG GTGCCAAGTG GGATGAACAC CTTAATAAGA GTGAGTCATT ACTGGTTAAC
GCCTCAACAT GGGGCTTAAT GCTGACCGGT AAACTGGTTA AGTTAGATCG TAATACTGAC
GGTTCGCCAA GTCATATACT TAAACGTCTG GTTAATCGTG TTGGTGAGCC AATGATCCGC
CAAGCCATGC TTGCAGCAAT GAAGATCATG GGTAAGCAAT TTGTGTTAGG TGAGGACGTT
AAAGAAGCAC TTAAAAATAG TGAAGCTAAA CGTAAGTTAG GTTATACCCA TAGCTATGAC
ATGTTAGGTG AAGCAGCATT AACCGCCAAT GATGCGCAAA AGTATTTTAA CGATTACAGC
AATGCTATTC GCGATTTAGG CGAACAGCAA TACGATGAAG CGAACTCACC AAGACCCACC
ATATCAATCA AACTATCTGC TTTGCACCCT CGTTATGAAG TCGCTAACGA GGATCGTGTA
TTAAGTGAAT TATACGACAC AGTTATTAAG CTGATAGTAC AAGCGCGTGA ACTTAACATT
GGTATTTCTA TTGATGCTGA AGAAGTTGAC CGTCTTGAAT TGTCATTGAA GTTATTTAAG
CAGCTTTATC AGTCAGAAGC CGCTAAAGGC TGGGGCTTAT TAGGCATTGT GGTGCAAGCT
TATTCTAAGC GTTGTTTACC GGTGTTGTGT TGGTTGACGC GTCTTGCTAA AGATCAAGGC
GATGAAATTC CGCTGCGTTT AGTTAAAGGT GCTTATTGGG ACAGTGAGCT TAAATGGGCA
CAACAAGCGG GTGAGCGTGG TTACCCACTC TATACCCGTA AAGCAGGTAC TGACGTGTCA
TATCTTGCTT GCGCACGTTA TTTGCTGTCT GAAGCCACCC GTGGTGCGAT TTACCCACAA
TTTGCCACCC ATAACGCTCA AACCGTTGCC AGCATTGATG CGATGGCAGG TAATCGTATA
TATGAGTTCC AACGTTTACA CGGCATGGGG CAAGAGCTTT ACGACACTAT GCTTGCAGAA
AGCGGTGCTA AAGCGGTACG TATCTATGCC CCCATTGGCG CCCATAAAGA CTTACTGCCG
TATTTAGTAC GCCGTTTACT TGAAAACGGT GCCAATACCT CATTTGTGCA TAAACTGGTC
GACCCTAATA CGCCGATTGA AAGCTTAGTC GTTCATCCAT TGGTGACGCT ATTAGGTTAC
AAGTCGTTAG CGAATCAAAA AATTGTTAAA CCTGCTGATA TTTTCGGTGC AGAACGTAAG
AACTCTAAAG GATTAAACAT GAACATTATT TCTGAGTCAG AGCCATTTTT TGCTGCACTG
GATAAATATA GCGATACTCA ATGGACCGCG GGTCCATTGG TAAACGGTAA AACATTAACG
GGTGAAGTAC AAACTGTTGT TAGCCCATAT GATACTTCGC TAACCGTCGG TACCGTGGCT
TTTGCAGATG CAAACGCAAT TGAGCAAGCC ATTGCTGGTG CAGATGCTGC TTTTGGTAGT
TGGGTTCGTA CGCCTGTTGA AACTCGAGCG AATGCACTAC AGAAATTAGC TGATTTATTG
GAAGAAAATC GTGAAGAGCT GATTGTATTA TGTACCCGTG AAGCGGGTAA GAGCATTCAA
GACGGCATTG ATGAAGTTCG TGAAGCAGTC GATTTTTGTC GTTACTACGC GGTACAAGCT
AAGAAGATGA TGGCTCAGCC TGAATTACTT CCTGGCCCGA CAGGCGAGTT GAACGAACTG
TTTTTACAAG GCCGCGGAAT TTTTGTGTGT ATTAGTCCAT GGAACTTCCC GTTGGCGATT
TTCTTAGGCC AAGTATCTGC AGCACTTGCC GCGGGGAATA CTGTTATTGC CAAGCCTGCG
GAGCAAACCT GTTTAATCGG TTATCGTGCA GTACAACTTG CGCATGAAGC CGGTATTCCT
ACCGATGTAT TACAGTTTTT ACCAGGTACT GGCGCTGTTG TTGGTTCTGC AATCACTGCA
GATGAACGTA TTGGCGGTGT GTGTTTTACC GGCTCTACTG GCACCGCTAA ATTGATTAAC
CGCACTTTGG CAAACCGTGA TGGCGCAATT ATTCCATTAA TTGCTGAAAC CGGTGGTCAA
AATGCCATGG TTGTGGACTC AACATCACAA CCAGAGCAAG TTGTTAATGA CGTAGTTTCT
TCATCGTTCA CCAGTGCTGG TCAGCGTTGT TCGGCATTGC GAGTCTTATT TTTACAAGAA
GATATTGCAG ATCGCGTGAT TGAAGTGATG AAAGGCGCCA TGGAGCAATT AGTGATTGGC
AACCCAAGTT CAGTTAAAAC TGACGTGGGA CCAGTGATTG ATGCCACTGC CAAAGCAAAC
TTGAATGCCC ACATTGATCA TATCAGCCAG GTCGGCAAGT TAATTAATAA ACTTGAATTA
CCAGCGGGTA CTGAAAACGG CCATTTTGTA GCGCCTACAG CCGTTGAAAT TAGTTCTATT
AAGTTACTCG AAAAAGAACA TTTTGGTCCT ATTTTGCATG TTATTCGTTA TAAAGCGGCT
GATTTGGCAA AAGTGGTTGA TGAAATCAAC AGCACAGGTT TTGGGTTAAC CTTAGGTATT
CACAGCCGTA ATGAAGGCCA TGCGCTGTCG CTTGCTGACA AAGTAAACGT AGGTAACGTG
TACATTAACC GTAACCAAAT TGGCGCCGTT GTTGGCGTGC AACCATTTGG TGGTCAAGGT
TTATCGGGCA CCGGTCCTAA AGCGGGTGGC CCGCATTATT TAACTCGTTT TGTGACCGAA
AAAACGCGTA CTAATAACAT TACCGCGATT GGTGGTAATG CGACATTATT GTCACTGGGT
GATGCTGAAG AATAA
 
Protein sequence
MEANTMFKAS EVLDGRYDNA TLEELFTAVT NNYIVDEEQY LSELIKLVPS SEQDIEQVTR 
RAHELVSKVR QFEKKGLMVG IDAFLQQYSL ETKEGIILMC LAEALLRIPD AATADALIQD
KLSGAKWDEH LNKSESLLVN ASTWGLMLTG KLVKLDRNTD GSPSHILKRL VNRVGEPMIR
QAMLAAMKIM GKQFVLGEDV KEALKNSEAK RKLGYTHSYD MLGEAALTAN DAQKYFNDYS
NAIRDLGEQQ YDEANSPRPT ISIKLSALHP RYEVANEDRV LSELYDTVIK LIVQARELNI
GISIDAEEVD RLELSLKLFK QLYQSEAAKG WGLLGIVVQA YSKRCLPVLC WLTRLAKDQG
DEIPLRLVKG AYWDSELKWA QQAGERGYPL YTRKAGTDVS YLACARYLLS EATRGAIYPQ
FATHNAQTVA SIDAMAGNRI YEFQRLHGMG QELYDTMLAE SGAKAVRIYA PIGAHKDLLP
YLVRRLLENG ANTSFVHKLV DPNTPIESLV VHPLVTLLGY KSLANQKIVK PADIFGAERK
NSKGLNMNII SESEPFFAAL DKYSDTQWTA GPLVNGKTLT GEVQTVVSPY DTSLTVGTVA
FADANAIEQA IAGADAAFGS WVRTPVETRA NALQKLADLL EENREELIVL CTREAGKSIQ
DGIDEVREAV DFCRYYAVQA KKMMAQPELL PGPTGELNEL FLQGRGIFVC ISPWNFPLAI
FLGQVSAALA AGNTVIAKPA EQTCLIGYRA VQLAHEAGIP TDVLQFLPGT GAVVGSAITA
DERIGGVCFT GSTGTAKLIN RTLANRDGAI IPLIAETGGQ NAMVVDSTSQ PEQVVNDVVS
SSFTSAGQRC SALRVLFLQE DIADRVIEVM KGAMEQLVIG NPSSVKTDVG PVIDATAKAN
LNAHIDHISQ VGKLINKLEL PAGTENGHFV APTAVEISSI KLLEKEHFGP ILHVIRYKAA
DLAKVVDEIN STGFGLTLGI HSRNEGHALS LADKVNVGNV YINRNQIGAV VGVQPFGGQG
LSGTGPKAGG PHYLTRFVTE KTRTNNITAI GGNATLLSLG DAEE