Gene Sfri_0567 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0567 
Symbol 
ID4278508 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp657151 
End bp657732 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content40% 
IMG OID638133325 
ProductSH3 type 3 domain-containing protein 
Protein accessionYP_749266 
Protein GI114561753 
COG category[T] Signal transduction mechanisms 
COG ID[COG3103] SH3 domain protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTAAGAG TACTTTCAAT TCTTATATTT TTACTTGCGC CAAGTGGCGT ATTTGCAGCG 
CAAGCCCCAA CGCGTTTTAT TTCTGATGAT GTGTTTACCT ATATTCACGG TGGACCGGGT 
ACAGAGTTTC GTATTATCGG TAGTGTTGAA GCAGGTCAGC CGGTCACTTT ATTGGATAAT 
ACTGAAGGTG ATTTTACTCA AATCATTGAT CATAAAGGTC GTGAAGGCTG GGTATTAACC 
AGTTTAGTTT CAGATCAGCC TAGTTTTCGT GAACGTTTTC CTGAAATGGA AGCACAACTA 
AAACAAGCTA ATGAGCAATT AAATAATATT ACTCAAAATA CTGACAATAC CGAAGAGTCT 
TTAACATTGT CTAATGAAAA GGTGGCAGAG TTAAGAGCTG CATTGACTAA AGCGATTAAA 
GAGCGAGATG ATGCTAAGTC AAAGGTGCAA CAAGCCGCTG ATAACCAACG TTATGAAATG 
TGGCAGCAAG GTGGGTTAAT TGCAGGTATT GGTGCATTGA TTGGTATTGT ATTGGTGTAT 
TTACCTCGTC CGCAACGTCG TAAGAAAAGC CGTTGGATGT AA
 
Protein sequence
MLRVLSILIF LLAPSGVFAA QAPTRFISDD VFTYIHGGPG TEFRIIGSVE AGQPVTLLDN 
TEGDFTQIID HKGREGWVLT SLVSDQPSFR ERFPEMEAQL KQANEQLNNI TQNTDNTEES 
LTLSNEKVAE LRAALTKAIK ERDDAKSKVQ QAADNQRYEM WQQGGLIAGI GALIGIVLVY 
LPRPQRRKKS RWM