| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0553 |
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| Symbol | |
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| ID | 4278721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 638536 |
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| End bp | 641019 |
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| Gene Length | 2484 bp |
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| Protein Length | 827 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638133311 |
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| Product | nitrate reductase catalytic subunit |
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| Protein accession | YP_749252 |
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| Protein GI | 114561739 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR01706] periplasmic nitrate reductase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCATCA GTCGTCGCGA GTTTTTAAAA GCCAACGCCG CTGCCGCAGC AGCGTCGGCC
GTGGGTATCG CTATTCCAAT TAATATCGTT CAAGCTGCAG AAGGTAAAAG TGAAATAAAA
TGGGATAAAG CCCCATGTCG CTTTTGCGGT GTAGGTTGTA GCGTCCTAGT AGGTACTCAA
AATGGTAAAA TTGTTGCTAC TCAAGGCGAC CCAGAAAGCC CTGTTAACAA AGGCTTAAAT
TGTATTAAAG GGTATTTCTT ATCTAAAATC ATGTATGGCA AGGACCGATT AACCTCGCCA
TTACTCAGAA TGAAAGATGG TAAATATGAT AAAGAAGGTG ATTTTACGCC AGTAAGCTGG
GATGTTGCCT TTGATACCAT GGCCGAAAAA TGGAAAGCCA GCATAGCCAA AAAAGGCCCA
ACCTCTGTAG GAATGTTTGG TTCTGGCCAG TGGACTATTT GGGAAGGCTA CGCCGCATCT
AAGCTTCATA AAGCTGGTTT TCTCACCAAC AATATCGACC CGAATGCACG CCATTGTATG
GCATCAGCTG TTGGTGGATT CATGCGTACC TTCGGGATTG ATGAACCCAT GGGTTGTTAT
GATGACTTAG AAGCCGCTGA CCACTTTGTA TTGTGGGGCG CCAACATGGC AGAAATGCAT
CCCATCTTGT GGGCCCGCTT AACAGACCGT CGCTTAAGCC ATAAAGATGC CCGCGTACAC
GTACTCTCTA CCTATGAAAA CCGTAGCTTT GACTTAGCAG ATAATGCCAT GGTGTTTAAG
CCACAAACTG ACTTGGTCAT CTTAAATTAT ATTGCCAACT ACATTATTCA AAACAAAGCC
GTAAACAAAG ACTTTGTTAG CAAGCACACT AAATTTGCCC TGGGTACCAC TGACATTGGT
TATGGCTTGC GCCCTGAACA TCCATTGGAA AAGAAAGCTA AAAATCCAGG TAGCGGTGAT
GCCAAACCGA TTAGCTTTGA CGAGTATGCT AAATTCGTTA GCACTTACAC AGTTGAATAC
GCGGCAAAAA TGAGCGGCGT ACCGGCTGAA AAACTTGAGA TTATGGCAAA AGCTTATGCC
GACCCTAACA TTAAAGTGAT GAGCTTATGG ACCATGGGTA TAAACCAGCA TACTCGTGGT
GTGTGGGCAA ATAACATGCT CTACAACATT CACTTACTCA CCGGTAAAAT AGCGACTCCA
GGCAACAGCC CATTCTCATT AACAGGTCAA CCTTCAGCTT GTGGTACTGC TCGTGAAGTA
GGCACATTCT CACATCGTTT ACCTGCTGAC ATGGTGGTGA ACAATGATAA ACATCGTGAG
ATTACTGAAA AACTTTGGCA AGTCCCTGCC GGCACTATTC CAGCTAAACC TGGATACCAT
GCCGTGCTGC AAAGCCGTAT GCTTAAAGAT GGTAAATTAA ACTGTTATTG GACTATGTGT
ACTAACAATA TGCAGGCTGG TCCTAATATC AATGATGAAG TTTATCCCGG ATTCCGTAAT
CCAGAAAACT TTATTGTGGT CTCGGATCCT TACCCAACTA TCACGGCAAT GGCCGCAGAT
TTAATTCTTC CAACTGCAAT GTGGGTTGAA AAAGAAGGCT CATATGGTAA CGCAGAACGA
CGTACTCATT TCTGGCATCA GCTCGTACCA ACGCCAGAAG GGTCTAAGTC AGATTTATGG
CAGCTGGTTG AGTTCTCTAA GCGCTTTAAA GTCAGTGAAG TCTGGCCCGC TGAGCTAATC
GCTAAACAAC CAGAGTTAGC CGATAAAACA TTATATGAAG TGTTATTTGC TAACGGCGTA
ATCAATAAGT TCCCAACCAG CGATTGTAAA GGTGCTTATA ACGATGAAAA CGAACACTTT
GGCTTTTACC TGCAAAAAGG TATTTTCGAA GAATATGCAC AATTTGGTCG CGGCCATGCA
CACGATTTAG CAGACTTTGA CACTTACCAT CAAACGCGAG GATTACGCTG GCCTGTCGTT
AATGGCAAAG AAACCACCCG CCGCTTTGTT GAAGGCAGTG ACCCTTATGT CAAAGCAGGT
GAAGGATTCA ATTTTTACGG TAAGCCAGAT GGCAAAGCCG TCATATTTGC ACTGCCTTAT
GAACCGGCAG CAGAAGAACC TAATGAAGAG TTCGATCTAT GGATGTCAAC AGGACGAGTG
CTGGAACATT GGCACACAGG GTCAATGACC GCTCGCGTAC CAGAATTGCA TAAAGCGATG
CCAAGTGCTC AAGTCTTTAT GCACCCTGCT GACGCTAAAG CTCGTGGGTT AGTCCAAGGG
GATGAGGTTA CTGTTGCATC ACCACGCGGC GAAATCAATA CTCGAGTGGA AACTAAAGGC
CGAAACAAGC CGCCTAGAGG TGTGGTATTT ATGCCATTCT TCGACGCTAA GCAATTAGTG
AACAAGCTGC TTTTGGATGC CACGGACCCA TTATCAAAAG AAACTGATTT CAAAAAGTGT
CCAGTGAAAA TATTTAAAGC CTAA
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| Protein sequence | MSISRREFLK ANAAAAAASA VGIAIPINIV QAAEGKSEIK WDKAPCRFCG VGCSVLVGTQ
NGKIVATQGD PESPVNKGLN CIKGYFLSKI MYGKDRLTSP LLRMKDGKYD KEGDFTPVSW
DVAFDTMAEK WKASIAKKGP TSVGMFGSGQ WTIWEGYAAS KLHKAGFLTN NIDPNARHCM
ASAVGGFMRT FGIDEPMGCY DDLEAADHFV LWGANMAEMH PILWARLTDR RLSHKDARVH
VLSTYENRSF DLADNAMVFK PQTDLVILNY IANYIIQNKA VNKDFVSKHT KFALGTTDIG
YGLRPEHPLE KKAKNPGSGD AKPISFDEYA KFVSTYTVEY AAKMSGVPAE KLEIMAKAYA
DPNIKVMSLW TMGINQHTRG VWANNMLYNI HLLTGKIATP GNSPFSLTGQ PSACGTAREV
GTFSHRLPAD MVVNNDKHRE ITEKLWQVPA GTIPAKPGYH AVLQSRMLKD GKLNCYWTMC
TNNMQAGPNI NDEVYPGFRN PENFIVVSDP YPTITAMAAD LILPTAMWVE KEGSYGNAER
RTHFWHQLVP TPEGSKSDLW QLVEFSKRFK VSEVWPAELI AKQPELADKT LYEVLFANGV
INKFPTSDCK GAYNDENEHF GFYLQKGIFE EYAQFGRGHA HDLADFDTYH QTRGLRWPVV
NGKETTRRFV EGSDPYVKAG EGFNFYGKPD GKAVIFALPY EPAAEEPNEE FDLWMSTGRV
LEHWHTGSMT ARVPELHKAM PSAQVFMHPA DAKARGLVQG DEVTVASPRG EINTRVETKG
RNKPPRGVVF MPFFDAKQLV NKLLLDATDP LSKETDFKKC PVKIFKA
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