| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0549 |
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| Symbol | |
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| ID | 4278717 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 632671 |
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| End bp | 634137 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638133307 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_749248 |
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| Protein GI | 114561735 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0215358 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAACAT TGAGTCGGCT TGAGTTCTCT AGCGTATTAT TGATTACGCT GTTGATTTTC
ATTACTTTGA TTAACGCTAA GCATGCTAGT GCTTCGGTGG TAGAGACTCA GTCTTTTATC
AATTTAAAAA ACCGTAATAT CATCCGTTAC TGTGTTGATC CCGATTGGTT ACCTTATGAA
GCTATTGTCG ATGGCCGCCA TACTGGGATT TCATCTGATT ATTTAGCATT ATTAGCAAAT
TATACCGATC TGACTTTTGT GTTAATGCCC ACCTCGTCTT GGCGACAGAG TTTAGAATTA
CTTAAACAAG GTGAGTGCGA GTTAACCCCC ATTTTAAATC AAACCCCCAA ACGCGACGCA
TATCTCTCTT TTAGCGATAT CTTTTTTAAA TCTCCAAATG TATTGGTGTC ATTAAAATCC
CAGCCTTTTT TGCAAGGATT TGAAAATATA GGTGATCGCT TATTGGCTAT ACCCAAAGAT
TATCGTCTAG TGGAATATAT CCAACAATTT TACCCCACTA TCAATACCGT ATTGACTAAG
AACGAGCGAC AAGGATTAGA AAAGGTTGCT AATGGTGAAG CGGATGTCTT TGTAGGGTCG
ATGTTTTCTG TTAACGCCTA TATTCAACAA CATGGGTTAA CCTCGTTAAA AATAGCGGGG
TGGGGGGGTC CTGAAGATGA GCTACGCATT GGCGTTATTC ATGCAAAACA AGATTTGCTG
TCACAGATTA ATGCTGGATT AGCAAAAATC ACTCAGGCAG ACCATATTTC AGTTTATAAG
AAATGGCATA ACATTACAGT TGTTGAGGAC ATCGATTATA GCTTAGTGGT TCAAGTGGTG
ACTGCACTGG GGATGTTTAT CTTATTTCTG CTTTACCGAA CAATGTGTGT TAGCAAATAC
AATGTTCATT TAGAAACCAG CAACAAGCAG TTGCAAAAAT TACAGTTAGA ACTGGAGAAG
AAAAATTGCG ATCTCGATTT TTTGGCTCAA CATGATCCGC TGACAAAATT GTATAACCGC
CAATATTTTA ATCAAACCTT TTTAGATGAT GCTAGGCAGC CACAAAAAAA AATGCGTCAA
AACAATATGA GTTTGATTAT CATTGATATA GATTTCTTTA AAGCGATTAA TGACAAGCAT
GGGCATACAA TTGGTGACAA AATATTAGTT CAAGTCGCGC AAGTGCTACA AGCATCAGTA
AGAGAACTTG ATGTTGTTGC AAGGTGGGGC GGCGAGGAAT TTGTGGTGGT TTGCCAACAT
GTAGCGTTAC ACGATGCCAC TGAGCTATGC CAACGAATTA CTGATGAACT TAGTCATTTT
CATTTTTATC ACAATATTAA AGTGACCTGC AGTTTCGGAA TTGCCTTGCT GGGTGAGAAT
GAACCGATCC AAGCTTGCTT TGAACGAGCC GATGCCGCGT TATACAAAGC TAAGCAGTCT
GGGCGTAATC AATATTGTAG TGCGTAG
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| Protein sequence | MRTLSRLEFS SVLLITLLIF ITLINAKHAS ASVVETQSFI NLKNRNIIRY CVDPDWLPYE
AIVDGRHTGI SSDYLALLAN YTDLTFVLMP TSSWRQSLEL LKQGECELTP ILNQTPKRDA
YLSFSDIFFK SPNVLVSLKS QPFLQGFENI GDRLLAIPKD YRLVEYIQQF YPTINTVLTK
NERQGLEKVA NGEADVFVGS MFSVNAYIQQ HGLTSLKIAG WGGPEDELRI GVIHAKQDLL
SQINAGLAKI TQADHISVYK KWHNITVVED IDYSLVVQVV TALGMFILFL LYRTMCVSKY
NVHLETSNKQ LQKLQLELEK KNCDLDFLAQ HDPLTKLYNR QYFNQTFLDD ARQPQKKMRQ
NNMSLIIIDI DFFKAINDKH GHTIGDKILV QVAQVLQASV RELDVVARWG GEEFVVVCQH
VALHDATELC QRITDELSHF HFYHNIKVTC SFGIALLGEN EPIQACFERA DAALYKAKQS
GRNQYCSA
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