Gene Sfri_0543 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0543 
Symbol 
ID4276963 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp623058 
End bp623798 
Gene Length741 bp 
Protein Length246 aa 
Translation table11 
GC content43% 
IMG OID638133301 
Product16S ribosomal RNA methyltransferase RsmE 
Protein accessionYP_749242 
Protein GI114561729 
COG category[S] Function unknown 
COG ID[COG1385] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR00046] RNA methyltransferase, RsmE family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.291775 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAGTCC CACGTATTTT TCAGCCCCTA GACAATTTAC AGCAAGGGCA AACTCTTCAA 
TTAGATGAGG ATGGCGTCGC CCACATTGGC CGAGTATTGC GAATGGGGAT GGGTGACCAA
ATCAGCTTGT TTAACGGTGA TGGCAACGAT TACTTAGCTG AAATCATTGA AACCAGTAAG
AAATCGATCG CTGTCACGGT CTTAAGTTGT GAAGCTAATA ATAGCGAATC ACCATTAGAC
CTACATTTAG GTCAGGTGAT TTCACGCGGA GACAGGATGG AGTTTACAGT TCAGAAGTCA
GTAGAGTTGG GTGTAACAAC CATTACTCCG TTATTTTCTG ACCGTTGTGG TGTCAAACTG
AGTGGTGAGC GCTTAGAGAA AAAACTGCAA CAATGGCAAA AAATTGTTAT CAGTGCCTGT
GAACAATCTG GCCGCAGTAT TGTTCCGATT GTTCGTCCAG CAATGACATT GGCGCAATGG
TGTGAAGAGT CCACCGAAGC CTTAAAACTG AATTTGCACC CGAGAGCCTC ACACGGTATT
AATGGCTTGC AGTTATCTGG TCAACACCAC AAAGTAAGAT TATTAATTGG CCCAGAAGGC
GGTTTGTCTG ACGAAGAAAT TGCCATGACA GAAACCCAAC ATTTTACCGA TATTTTATTG
GGGCCAAGGG TACTTAGAAC AGAAACTGCG TCATTAACTG CCATTACCGC ATTACAAGTT
AAATTTGGTG ATATTGGGTA A
 
Protein sequence
MRVPRIFQPL DNLQQGQTLQ LDEDGVAHIG RVLRMGMGDQ ISLFNGDGND YLAEIIETSK 
KSIAVTVLSC EANNSESPLD LHLGQVISRG DRMEFTVQKS VELGVTTITP LFSDRCGVKL
SGERLEKKLQ QWQKIVISAC EQSGRSIVPI VRPAMTLAQW CEESTEALKL NLHPRASHGI
NGLQLSGQHH KVRLLIGPEG GLSDEEIAMT ETQHFTDILL GPRVLRTETA SLTAITALQV
KFGDIG