Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0543 |
Symbol | |
ID | 4276963 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 623058 |
End bp | 623798 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638133301 |
Product | 16S ribosomal RNA methyltransferase RsmE |
Protein accession | YP_749242 |
Protein GI | 114561729 |
COG category | [S] Function unknown |
COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.291775 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGAGTCC CACGTATTTT TCAGCCCCTA GACAATTTAC AGCAAGGGCA AACTCTTCAA TTAGATGAGG ATGGCGTCGC CCACATTGGC CGAGTATTGC GAATGGGGAT GGGTGACCAA ATCAGCTTGT TTAACGGTGA TGGCAACGAT TACTTAGCTG AAATCATTGA AACCAGTAAG AAATCGATCG CTGTCACGGT CTTAAGTTGT GAAGCTAATA ATAGCGAATC ACCATTAGAC CTACATTTAG GTCAGGTGAT TTCACGCGGA GACAGGATGG AGTTTACAGT TCAGAAGTCA GTAGAGTTGG GTGTAACAAC CATTACTCCG TTATTTTCTG ACCGTTGTGG TGTCAAACTG AGTGGTGAGC GCTTAGAGAA AAAACTGCAA CAATGGCAAA AAATTGTTAT CAGTGCCTGT GAACAATCTG GCCGCAGTAT TGTTCCGATT GTTCGTCCAG CAATGACATT GGCGCAATGG TGTGAAGAGT CCACCGAAGC CTTAAAACTG AATTTGCACC CGAGAGCCTC ACACGGTATT AATGGCTTGC AGTTATCTGG TCAACACCAC AAAGTAAGAT TATTAATTGG CCCAGAAGGC GGTTTGTCTG ACGAAGAAAT TGCCATGACA GAAACCCAAC ATTTTACCGA TATTTTATTG GGGCCAAGGG TACTTAGAAC AGAAACTGCG TCATTAACTG CCATTACCGC ATTACAAGTT AAATTTGGTG ATATTGGGTA A
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Protein sequence | MRVPRIFQPL DNLQQGQTLQ LDEDGVAHIG RVLRMGMGDQ ISLFNGDGND YLAEIIETSK KSIAVTVLSC EANNSESPLD LHLGQVISRG DRMEFTVQKS VELGVTTITP LFSDRCGVKL SGERLEKKLQ QWQKIVISAC EQSGRSIVPI VRPAMTLAQW CEESTEALKL NLHPRASHGI NGLQLSGQHH KVRLLIGPEG GLSDEEIAMT ETQHFTDILL GPRVLRTETA SLTAITALQV KFGDIG
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