| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0537 |
|---|
| Symbol | |
|---|
| ID | 4276957 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 615944 |
|---|
| End bp | 617080 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638133295 |
|---|
| Product | peptidase M50 |
|---|
| Protein accession | YP_749236 |
|---|
| Protein GI | 114561723 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1994] Zn-dependent proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTAC TAAATATTGA ATGTCTAGGT AAACGTCTGC GACTCGAAGG CTCGATTGCG
GGTTGGCAGC AACTTTATTG GGATAATCAA CTTGTATCGC AAAAGTCTGC AAGCGCTAGT
GACCAAGCCT TTCATATCCA TTCATTTGAA CTGACCGCTC AAACATCGGT ACCGACTGAA
ACAAATATCA ACAACGACGA CCCCGTTAAC CCCAATATTG GTTCACTACC GATACGATTA
GAAATCGATG TTAACTGGCA ACCATTTCAA CTGGATTATT GTTTATTAAT AGATGATGAA
TCCATAACCC AAGGCCAACG CACCGTTGAA GATATTGAGC GTCAAACACC TGAAATTGCA
GCAGTAAAAA ATCAAAAGCT CAGTGTTGTT GGGCTGGCAT CATTAGGTTT TAAGCTACTA
AAAAGTGCCA AGGTGGTTAA GGTCCTTTTT GCTGGAGCCA GTGTAGCGGC CTATTCTTGG
TTATTTTCAT TTGAATTTGC CTTAGCTCTC ATCGGTTGCT TAGTATTTCA TGAATATGGT
CATATTCGAG CGATGAAACA TTTCGGCATG AAAACCAAAG GGATCTATTT AATCCCTTTT
GTTGGCGGCT TAGCGCTAAG TGATGAACGC ATCAACACCC GCTGGCAAGA TGTGTATATT
TCGATTATGG GCCCCACTTT TGGACTCATT TTATCGATTA TCTCACTAGG ACTTTATTGG
CTAACCGGTA ACGTATTCTT TGCTGGGTTA GCGGCATTCA ATGCACTGCT AAATCTGTTT
AATTTACTGC CCATTTTACC TCTCGATGGC GGGCATATTT TAAAAAGTAT CAGCTTTTCG
ATGAATAGTG TTGTCGGTCT AGTTGCTTGT ATTGCTGGTG CCGCTATCGG TGTGTTCATT
AGCTATAGCT TAGGGCTAGC CTTACTTGGC TTTTTGTTAC TGATCGGCAG TGTAGAAATT
GTATTTGAAT GGCGCGGTCG TCATCAAAGT CATTTATTGC CGCTAGATCG TTACGGGCAA
ATTTTCTCTA CAGTATGGTA TTTGCTCACG GTAGCAAGTT TAGTGGGTAT TATTTGGTAT
TTTGCTGCTT CTGGCGACGA AATGTTAGCG ATTCCGCTGC AGATTTTAGG CAGTTAA
|
|---|
| Protein sequence | MELLNIECLG KRLRLEGSIA GWQQLYWDNQ LVSQKSASAS DQAFHIHSFE LTAQTSVPTE
TNINNDDPVN PNIGSLPIRL EIDVNWQPFQ LDYCLLIDDE SITQGQRTVE DIERQTPEIA
AVKNQKLSVV GLASLGFKLL KSAKVVKVLF AGASVAAYSW LFSFEFALAL IGCLVFHEYG
HIRAMKHFGM KTKGIYLIPF VGGLALSDER INTRWQDVYI SIMGPTFGLI LSIISLGLYW
LTGNVFFAGL AAFNALLNLF NLLPILPLDG GHILKSISFS MNSVVGLVAC IAGAAIGVFI
SYSLGLALLG FLLLIGSVEI VFEWRGRHQS HLLPLDRYGQ IFSTVWYLLT VASLVGIIWY
FAASGDEMLA IPLQILGS
|
|---|
| |