| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0510 |
|---|
| Symbol | |
|---|
| ID | 4278643 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 577874 |
|---|
| End bp | 579076 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638133268 |
|---|
| Product | secreted porin family protein |
|---|
| Protein accession | YP_749209 |
|---|
| Protein GI | 114561696 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.938246 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAT TATATGCACG TAAACCATTA GTAATAGCTG TCGCTATTGC AATACCGCTT
ATGCTTGGCA CGGCCTCGGT TAATTCGGCA GAATTTGATA TCGCAGACAC TAAAGTGGCT
GTCGGTGGTT ACGCTAAATT TATGCTGAAT TACGATACCG ACGGTACGAT AACGGCCCCA
TTTAATGGCG ATCTTTATAG TGTTTATACC ACTCCAATTG ATGGCTCTGC CAACGCTGAA
AAATCGGATT TACACATGAC GGCAAGAGAA AGCCGCTTAT TCATTAAAAC CGCATCAGAA
AATAAATATG GCACATTAAA GACTTATGTT GAAGGAGACT TTTTTGCCGA CATCGATAGT
GATGGCCCAA CTTGGTCTAA TAGTAACGGC TTCAGGATCC GCCATGCATA TGGTGAGATG
ACCATGGGTA AACACGTGGT TCTAGCGGGG CAAACATGGT CTAACTTCAT GGATTTTGCA
GGCATCATGC CATCGATGGA TTTCGCCACC GATCCTGGAA CCACGTTTGT CCGCCAGCCT
CAAGTTCGCT ACCAATACAA TATAGGTAAA GGTCAATACA CTTCAATCAG TCTTGAAAAC
CCAACGCTTG GACTAACAGC CGCAGGCCCT TATACCCTAG TGAATAACGG TTCAAGTGAA
GATGTCATGC CAGATATTAT CGCCAAGTAC TTTTACGCTA ATAGTAGAGT TACTTTTTCA
CCAAGAGTCG TGATCCGTCG ATTTGAACTA GAAGGTGATG ATGCTTTTGG TTATGGCCTA
GCATTAAACA CTAGCCTTAA ATTTGGAGAC GGTCATAAGG CAGTTCTCGG CTTAATGTAC
GGTGATGGTA TTGGTCGTTA TGCTGGTCTA GGTTTTAATG CCGGTGCCGG TATCAATGCT
GATGGGGAAA CAGATACCTT AGAATACAGC AGCATTACTG GCGGAGTCGT TTTTGCGCTT
CAACAAAATA TGCGATTAGC CATTGGTGCA GGTTATTCAG AACAAGACGA GAAAGGCCTT
GAAGACGGTA TCCTTACTGA ATATGCCAAT AAAACAGCCT TCTCTTGGCA TACCAATCTA
TTTTGGAATA TTACACCGGA TATTGAATGG GCAGTAGGCG TCACCATGGG TGATGTCGAA
AACATGGCCG ATAAAGAAGG TGATATGACA CGCTTTCAAA CTTATGTGAA ATATACCTTC
TAA
|
|---|
| Protein sequence | MNKLYARKPL VIAVAIAIPL MLGTASVNSA EFDIADTKVA VGGYAKFMLN YDTDGTITAP
FNGDLYSVYT TPIDGSANAE KSDLHMTARE SRLFIKTASE NKYGTLKTYV EGDFFADIDS
DGPTWSNSNG FRIRHAYGEM TMGKHVVLAG QTWSNFMDFA GIMPSMDFAT DPGTTFVRQP
QVRYQYNIGK GQYTSISLEN PTLGLTAAGP YTLVNNGSSE DVMPDIIAKY FYANSRVTFS
PRVVIRRFEL EGDDAFGYGL ALNTSLKFGD GHKAVLGLMY GDGIGRYAGL GFNAGAGINA
DGETDTLEYS SITGGVVFAL QQNMRLAIGA GYSEQDEKGL EDGILTEYAN KTAFSWHTNL
FWNITPDIEW AVGVTMGDVE NMADKEGDMT RFQTYVKYTF
|
|---|
| |