| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0498 |
|---|
| Symbol | |
|---|
| ID | 4278578 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 564496 |
|---|
| End bp | 565434 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638133255 |
|---|
| Product | transcriptional regulator, LysR family protein |
|---|
| Protein accession | YP_749197 |
|---|
| Protein GI | 114561684 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.883152 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCTCA ACCGCGTTCA AATATTCTCG CAAGTAGTAG AACAAGGCAG TTTTACCGGT
GCAGCTAAGG CGCTGGGGAT AACCAAAGCC ACTGTGAGTC GTAAAATCGC AGATCTAGAA
GCAGATGCTG GTGTGCAATT ACTGTTTCGC ACCACAAGGT CATTGAAACT CACTGAAGCG
GGTTCGAGCT ATTACCATCG CATCAGTAAA ATTTTACAAG ATTTACAAAA CGCCGAAGAT
CTTCTCAGCG CGAGCCAGCA AGACATCAAA GGCAACTTAA AAGTGATTTG CCCTATCGAG
CTAGGACAAT TATTTTTAGG TCGTATCCTT GCGCGGTTTC TGGCGGCTTA CCCCAATATC
ACCATTGATG CAGAACTGAC TAACCGTAAA ATTGATGTGA TTGAAGAAGG GGTCGATTTT
CTATTTCAAA TTACTGAACA GCATGATCCT AAGCTGCAAA GCTACTCATT AGTCACTGCC
AGCAGGCTGT TAATGGCAAG CCCAACTTAC CTTAAGCGGC ATGGCACACC ACAAATACCG
CAAGATTTAA TGCTCCATAC CGCAATTAAA TTACAGTCGG CCCACATTAA TGGTGGCTGG
CGTATTTTTG ATGGTAACCA ATGGCTTGAT CTCGATCCCC CTGCGCAGCT AAAAGTCAAT
AATGTCACCT TTGCCCGAGA AGCGGCAATT GAAGGCTTAG GCATTACTGC GGTACCGGTT
TTTATTGCAC AAGAAGCCAT AGACAGTAAG CAACTGATAC CGATACTAGA AGACTTTCCA
ATGATGCAAA CCAAGGTCAC CCTGAGCTTT CCGCAGCGTG TGTATTTACC CCGAAAATAC
CGAGTGTTTG TAGAGTTTTT ATATGCAGCT CTGTTTGAGC ATTGGGGTGA AGGCGTGCTC
GAAATTCCCG ATTTTGTTCA CCAAAGCAAT CATAATTAA
|
|---|
| Protein sequence | MDLNRVQIFS QVVEQGSFTG AAKALGITKA TVSRKIADLE ADAGVQLLFR TTRSLKLTEA
GSSYYHRISK ILQDLQNAED LLSASQQDIK GNLKVICPIE LGQLFLGRIL ARFLAAYPNI
TIDAELTNRK IDVIEEGVDF LFQITEQHDP KLQSYSLVTA SRLLMASPTY LKRHGTPQIP
QDLMLHTAIK LQSAHINGGW RIFDGNQWLD LDPPAQLKVN NVTFAREAAI EGLGITAVPV
FIAQEAIDSK QLIPILEDFP MMQTKVTLSF PQRVYLPRKY RVFVEFLYAA LFEHWGEGVL
EIPDFVHQSN HN
|
|---|
| |