| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0482 |
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| Symbol | hemE |
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| ID | 4278546 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 547769 |
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| End bp | 548833 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638133240 |
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| Product | uroporphyrinogen decarboxylase |
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| Protein accession | YP_749182 |
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| Protein GI | 114561669 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
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| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGAAT TAAAGAATGA TCGTTATTTA CGTGCGTTGC TAAAGCAGCC TGTTGATGTC
ACTCCAGTAT GGATGATGCG TCAAGCGGGA CGTTATTTAC CTGAGTATAA AGAAGTTCGT
GCTCAAGCGG GTGACTTTAT GTCTTTATGC CGTAATGCCG AATTGGCTTG CGAAGTCACT
TTACAGCCGT TACGTCGTTA TGACTTAGAT GCTGCGATTT TATTCTCAGA TATCCTGACC
GTGCCAGACG CAATGGGCTT AGGTTTGTAT TTCGAAGCAG GTGAAGGTCC GCGTTTTGAA
CGTCCAACTG ACACCATCGA TGCAATCAAA AAATTATGCA TTCCTGATCC AGAAGATGAA
TTAGGTTATG TAATGCGAGC TGTAAGTACC ATTCGTCGTG AACTGAATGG CTCTGTGCCG
TTAATTGGTT TTTCGGGTTC ACCTTGGACT TTGGCCACTT ACATGGTTGA AGGCGGTTCA
AGCAAAACTT TCGAAAAAAT CAAGCGTATG GCGTATGCAG AACCAGCTGC ATTGCATATG
TTATTAGATA AGTTAGCAGA CTCTGTGGTG TTATATCTTA ACGCTCAGGT GGCTAACGGC
GTACAATCGT TAATGATATT CGACTCGTGG GGCGGTGCGT TATCACATCA CGCTTACCGT
GAGTTCTCAT TACGTTATAT GCAAAAAATT GTTGATGGCT TAACTCGTTT TGCTGATGGC
CGTAAAGTGC CAGTTACTTT GTTCACTAAA GGCGGCGGAT TATGGTTAGA GTCTATGGCT
GAAACCGGTT GTGATGCATT AGGTTTAGAT TGGACTGTTG ATATTGGTGA CGCTCGTCGT
CGCGTAGGTC ATAAAGTGGC TCTACAAGGC AACATGGACC CATCAATGTT GTATGCTACG
CCAGAGCGTA TTCATCAAGA AGTTGATCAA ATTCTAGCGA GTTACGGTGA AGGTACTGGC
CATGTATTTA ACTTAGGCCA TGGTATTCAT CAACATGTTG ATCCTGAGCA TGCTGGTGCA
TTTATCAATT CTGTGCATGA GTTGTCAGGT AAATACCACA AGTAA
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| Protein sequence | MAELKNDRYL RALLKQPVDV TPVWMMRQAG RYLPEYKEVR AQAGDFMSLC RNAELACEVT
LQPLRRYDLD AAILFSDILT VPDAMGLGLY FEAGEGPRFE RPTDTIDAIK KLCIPDPEDE
LGYVMRAVST IRRELNGSVP LIGFSGSPWT LATYMVEGGS SKTFEKIKRM AYAEPAALHM
LLDKLADSVV LYLNAQVANG VQSLMIFDSW GGALSHHAYR EFSLRYMQKI VDGLTRFADG
RKVPVTLFTK GGGLWLESMA ETGCDALGLD WTVDIGDARR RVGHKVALQG NMDPSMLYAT
PERIHQEVDQ ILASYGEGTG HVFNLGHGIH QHVDPEHAGA FINSVHELSG KYHK
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