Gene Sfri_0459 details

Gene Information

• Locus tag: Sfri_0459
• Symbol: rho
• ID: 4277072
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: -
• Start bp: 526763
• End bp: 528025
• Gene Length: 1263 bp
• Protein Length: 420 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 638133217
• Product: transcription termination factor Rho
• Protein accession: YP_749159
• Protein GI: 114561646
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATTTAA CAGAATTAAA AGACACGCCA ATTTCAGATC TAGTTTCGCT TGCTGAAAGC 
ATGAATCTGG AAAACATGGC TCGTACCCGT AAACAAGATA TCATCTTCTC AATTTTGAAA 
GCTCACGCTA AAAGCGGAGA AGACATCTTC GGTGGCGGTG TATTAGAAAT CCTCCAAGAC 
GGATTTGGAT TTTTAAGAAG TTCAGATGGC TCATACCTTG CGGGTCCTGA CGATATTTAT 
GTTTCTCCAA GTCAAATTCG TCGCTTTAAC ATGCGTACTG GTGACAGTAT TTTTGGTAAA 
ATCAGGCCGC CGAAAGAAGG CGAAAGATAC TTTGCACTGT TGAAAGTCAG TGAAGTCAAC 
TTTGATAAAC CAGAAAGCTC TCGCAACAAA ATCCTGTTTG AAAACTTAAC CCCATTACAT 
GCAGAAGAGC GTCTTCGCAT GGAGCGCGGT AATGGTTCAA CAGAAGACAT CACCTCTCGC 
ATCCTTGATC TTTGTTCTCC AATCGGTAAA GGCCAGCGTG GTTTGATTGT TGCGCCGCCA 
AAAGCCGGTA AAACATTGTT ACTACAGAAT ATTGCTCAAA GTATTACTTA TAACAACCCA 
GATGTGGTGT TAATGGTATT ACTTATCGAT GAACGTCCTG AAGAAGTGAC CGAAATGCAG 
CGTATGGTTA AAGGCGAAGT CATTGCTTCT ACCTTTGATG AACCAGCCAG CCGTCACGTT 
CAAGTAGCCG AAATGGTTAT CGAGAAAGCA AAACGTTTAG TTGAGCATAA AAAAGACGTC 
GTCATTTTGT TAGATTCGAT TACTCGTTTA GCCCGTGCTT ATAACACCGT CATCCCTTCA 
TCGGGTAAAG TGTTAACCGG TGGTGTTGAT GCTAACGCAT TACATCGTCC TAAGCGTTTC 
TTTGGTGCTG CACGTAACAT TGAACACGGT GGCAGCTTAA CCATTATCGC CACAGCCCTG 
GTTGATACAG GCTCGAAAAT GGACGAAGTA ATTTACGAAG AATTTAAAGG TACTGGTAAC 
CAAGAGTTAC ACCTTTCTCG TAAAGCTGCT GAAAAACGCG TATTCCCAGC GATTGACTTC 
AACCGCTCTG GTACTCGTCG TGAAGAAAAA CTAACGACGC CAGAAGAACT TCAGAAAATG 
TGGATTTTAC GTAAAATCTT ACATCCAATG GACGAAGTTT CTGCAATGGA ATTCTTAATC 
GATAAATTGG CTATGACCAA AACTAACGAA GAATTTTTCA CTGCAATGAA GCGCGCTAAG 
TAA 

 

Protein sequence

MNLTELKDTP ISDLVSLAES MNLENMARTR KQDIIFSILK AHAKSGEDIF GGGVLEILQD 
GFGFLRSSDG SYLAGPDDIY VSPSQIRRFN MRTGDSIFGK IRPPKEGERY FALLKVSEVN 
FDKPESSRNK ILFENLTPLH AEERLRMERG NGSTEDITSR ILDLCSPIGK GQRGLIVAPP 
KAGKTLLLQN IAQSITYNNP DVVLMVLLID ERPEEVTEMQ RMVKGEVIAS TFDEPASRHV 
QVAEMVIEKA KRLVEHKKDV VILLDSITRL ARAYNTVIPS SGKVLTGGVD ANALHRPKRF 
FGAARNIEHG GSLTIIATAL VDTGSKMDEV IYEEFKGTGN QELHLSRKAA EKRVFPAIDF 
NRSGTRREEK LTTPEELQKM WILRKILHPM DEVSAMEFLI DKLAMTKTNE EFFTAMKRAK