Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0448 |
Symbol | |
ID | 4278146 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 512464 |
End bp | 513204 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638133206 |
Product | HAD family hydrolase |
Protein accession | YP_749148 |
Protein GI | 114561635 |
COG category | [R] General function prediction only |
COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
TIGRFAM ID | [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACATTGC AATTGCCTAA AGCTTCGATG ATCCAATATC AGCGCCTACA ACCTTTTAGC GCGATTAGTT TTGATTTAGA CGATACACTC TACAATAATC TTCCTTATGT AATACATGCC AGTGAGCAGC TGTTCTCGTT AATAAATCAA ATCTATCCTG CCACCACAAC ATGGGACGCT GCTCAATGGC AGCAACTCAA ACATGCACTG TTCAAACTAC ATCCAGAGTT AGCTCATGAT ACCAGTGCAG CGCGCTACGC CATGTTACAT CAAGGTTTAT TACACTTTGG TTATAGTGAG ACAGAAGCCA GCCAAGGTGC ACAAGATGGC ATGACATGTT TTCATCATCA TCGTAGTAAT TTTACTGTTG ATGAGAGCGT GCTGGAGTTA CTAGAACGTT TAAGCCAACG TTACCAACTT ATTGGTATTA CTAATGGTAA TGTCGACACC CAGCGCATCG GGTTAGATAA AGTGATGCAA TTTGTGCTAC ATCCTGGTCA TGGGGTTAAA ATGAAACCTG CTGCCGACAT GTTTAGCCTT GCTTGTCGTC AATTAGATAT TAAGCCGTCG GCGTTATTGC ATGTGGGCGA TCATCCGTTG TCTGATATCG CTGGAGCTAA AATGGCGGGC TGTCAAAGTG CGTGGCTAAA CCCATGTATG CAGCAACGGC ATAAAAAGGC GCAACCGGTA TTACCGCATA TCGAGATTAA CCAATTGGAT TTACTGCTTC AGTTGCTTTA G
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Protein sequence | MTLQLPKASM IQYQRLQPFS AISFDLDDTL YNNLPYVIHA SEQLFSLINQ IYPATTTWDA AQWQQLKHAL FKLHPELAHD TSAARYAMLH QGLLHFGYSE TEASQGAQDG MTCFHHHRSN FTVDESVLEL LERLSQRYQL IGITNGNVDT QRIGLDKVMQ FVLHPGHGVK MKPAADMFSL ACRQLDIKPS ALLHVGDHPL SDIAGAKMAG CQSAWLNPCM QQRHKKAQPV LPHIEINQLD LLLQLL
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