Gene Sfri_0447 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0447 
Symbol 
ID4278145 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp511565 
End bp512464 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content44% 
IMG OID638133205 
Producttyrosine recombinase XerC 
Protein accessionYP_749147 
Protein GI114561634 
COG category[L] Replication, recombination and repair 
COG ID[COG4973] Site-specific recombinase XerC 
TIGRFAM ID[TIGR02224] tyrosine recombinase XerC 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCCAA CTGACTGGCA AACGATATTT AGCCAACATT TGTCTTCGGA AAGACAGCTC 
TCAGCCTATA CCGTGCGCAA CTACCTGTTT GAATTACGTC GTGTCGAAGA CATGTTAGCT
GAATCAACTC AACTGATTGA GGTTAGCCGT GATCAGCTGC AATCAGTAAT GGCAACATTA
CACCGTAAAG GGCTGAGTCC CCGATCTTTA TCTTTGTGTT TGTCTGCCTT AAAACAGTTC
TTTGATTTTT TGCTGCGCGA AGGTGCTGTT ACGGTAAGCC CGGCACAGAC GTTAAGTGCA
CCTAAACAAA ATAAACCCTT ACCGAAAAAT ATGGATGTGG ATGCTGTCAG CCATTTATTG
TCCATAGAGG GCGATGATCC TTTGAGCTTG CGTGATAAAG CCATTATGGA ACTATTTTAT
TCAAGTGGTT TACGTTTAGC TGAGTTAGCC AGCTTAGATT GCGTTGACAT TAAGTTTGAT
CAAAGCGAAG TTAAAGTGAT GGGTAAGGGC AGTAAACAGC GTGTTGTGCC CATTGGCCAA
GTGGCATTAA CCGCGATCAA AACGTGGTTG AATTGCCGTA ACCAGTTATC TTGTGTAGAA
GCTGGGGATG CGTTATTTGT TAGCAGCCAA GGCAAGCGAT TGTCTCATCG TAGTATTCAA
GCGCGTATGG CTAAGTGGGG ACAAGAGCAA GCCATGGCGG TAAAAGTTCA CCCACATAAG
TTGCGTCATT CGTTTGCAAC TCATATGCTT GAATCAAGCC AAGATTTACG TGCAGTACAA
GAGTTACTCG GTCATGCGAA CTTATCGACC ACACAAATTT ACACCAGTTT AGACTTTCAA
CACCTTGCCA AAGTGTACGA TAACGCGCAT CCAAGAGCGA AAAAAGACAG GGGGAAATAA
 
Protein sequence
MKPTDWQTIF SQHLSSERQL SAYTVRNYLF ELRRVEDMLA ESTQLIEVSR DQLQSVMATL 
HRKGLSPRSL SLCLSALKQF FDFLLREGAV TVSPAQTLSA PKQNKPLPKN MDVDAVSHLL
SIEGDDPLSL RDKAIMELFY SSGLRLAELA SLDCVDIKFD QSEVKVMGKG SKQRVVPIGQ
VALTAIKTWL NCRNQLSCVE AGDALFVSSQ GKRLSHRSIQ ARMAKWGQEQ AMAVKVHPHK
LRHSFATHML ESSQDLRAVQ ELLGHANLST TQIYTSLDFQ HLAKVYDNAH PRAKKDRGK