| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0447 |
|---|
| Symbol | |
|---|
| ID | 4278145 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 511565 |
|---|
| End bp | 512464 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638133205 |
|---|
| Product | tyrosine recombinase XerC |
|---|
| Protein accession | YP_749147 |
|---|
| Protein GI | 114561634 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4973] Site-specific recombinase XerC |
|---|
| TIGRFAM ID | [TIGR02224] tyrosine recombinase XerC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCAA CTGACTGGCA AACGATATTT AGCCAACATT TGTCTTCGGA AAGACAGCTC
TCAGCCTATA CCGTGCGCAA CTACCTGTTT GAATTACGTC GTGTCGAAGA CATGTTAGCT
GAATCAACTC AACTGATTGA GGTTAGCCGT GATCAGCTGC AATCAGTAAT GGCAACATTA
CACCGTAAAG GGCTGAGTCC CCGATCTTTA TCTTTGTGTT TGTCTGCCTT AAAACAGTTC
TTTGATTTTT TGCTGCGCGA AGGTGCTGTT ACGGTAAGCC CGGCACAGAC GTTAAGTGCA
CCTAAACAAA ATAAACCCTT ACCGAAAAAT ATGGATGTGG ATGCTGTCAG CCATTTATTG
TCCATAGAGG GCGATGATCC TTTGAGCTTG CGTGATAAAG CCATTATGGA ACTATTTTAT
TCAAGTGGTT TACGTTTAGC TGAGTTAGCC AGCTTAGATT GCGTTGACAT TAAGTTTGAT
CAAAGCGAAG TTAAAGTGAT GGGTAAGGGC AGTAAACAGC GTGTTGTGCC CATTGGCCAA
GTGGCATTAA CCGCGATCAA AACGTGGTTG AATTGCCGTA ACCAGTTATC TTGTGTAGAA
GCTGGGGATG CGTTATTTGT TAGCAGCCAA GGCAAGCGAT TGTCTCATCG TAGTATTCAA
GCGCGTATGG CTAAGTGGGG ACAAGAGCAA GCCATGGCGG TAAAAGTTCA CCCACATAAG
TTGCGTCATT CGTTTGCAAC TCATATGCTT GAATCAAGCC AAGATTTACG TGCAGTACAA
GAGTTACTCG GTCATGCGAA CTTATCGACC ACACAAATTT ACACCAGTTT AGACTTTCAA
CACCTTGCCA AAGTGTACGA TAACGCGCAT CCAAGAGCGA AAAAAGACAG GGGGAAATAA
|
|---|
| Protein sequence | MKPTDWQTIF SQHLSSERQL SAYTVRNYLF ELRRVEDMLA ESTQLIEVSR DQLQSVMATL
HRKGLSPRSL SLCLSALKQF FDFLLREGAV TVSPAQTLSA PKQNKPLPKN MDVDAVSHLL
SIEGDDPLSL RDKAIMELFY SSGLRLAELA SLDCVDIKFD QSEVKVMGKG SKQRVVPIGQ
VALTAIKTWL NCRNQLSCVE AGDALFVSSQ GKRLSHRSIQ ARMAKWGQEQ AMAVKVHPHK
LRHSFATHML ESSQDLRAVQ ELLGHANLST TQIYTSLDFQ HLAKVYDNAH PRAKKDRGK
|
|---|
| |