| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0445 |
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| Symbol | dapF |
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| ID | 4278143 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 509907 |
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| End bp | 510734 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638133203 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_749145 |
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| Protein GI | 114561632 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGATCCATT TCACTAAGAT GCACGGACTG GGTAATGACT TTATGGTCGT TGATGGCGTA
ACACAAAATG TGTTTTTTTC GCCTGAACAA ATTCGCCGTC TTGCCGATCG GAATTTTGGG
ATTGGTTTTG ATCAACTTTT GTTGGTCGAG CCGCCTTATG ATCCAGATTT AGATTTCCAT
TATCGTATTT TTAATGCCGA TGGCAGTGAA GTTGAACAGT GTGGTAATGG CGCTCGTTGT
TTTGCTCGTT TTGTTCGCAA TAAAGGTTTA ACGCAAAAGA ATAAAATTCG CGTGAGTACT
AACTCGGGTA AAATAACTTT ACGAATTGAG CGTGATGGTA ACGTGACCGT TAATATGGGC
GTTCCTGTCA TCGAGCCAAG CCAAATTCCA TTTAAAGCCA AAAAAAGCGA AAAAACCTAT
TTATTGCAAA CGCCGATGCA AACTTATTTA TGCGGTGCCA TTTCAATGGG TAATCCACAT
TGTGTGATTC AAGTCGAAGA CGTACAAACG GTTAACGTGG ACGAAATTGG TAGCAGCTTG
ACCCGTCATG AGCGCTTTCC TAAAGGCGTA AATGTTGGTT TTATGCAAGT GATTAACCCT
GGGCACATTA AGTTACGTGT CTATGAGCGC GGCGCAGCAG AAACCTTAGC ATGTGGTACA
GGTGCATGTG CCGCGGCAGC AGTTGGACAA TTGCAGGATA AGCTAGACAA ACAGGTGAGA
GTCGACTTAC CTGGTGGCAG CTTAATCATA AATTGGGAAG GCGAGGGTAA GCCGTTATGG
ATGACCGGAC CGGCAGAACA TGTATATGAT GGACAAATAC AACTATGA
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| Protein sequence | MIHFTKMHGL GNDFMVVDGV TQNVFFSPEQ IRRLADRNFG IGFDQLLLVE PPYDPDLDFH
YRIFNADGSE VEQCGNGARC FARFVRNKGL TQKNKIRVST NSGKITLRIE RDGNVTVNMG
VPVIEPSQIP FKAKKSEKTY LLQTPMQTYL CGAISMGNPH CVIQVEDVQT VNVDEIGSSL
TRHERFPKGV NVGFMQVINP GHIKLRVYER GAAETLACGT GACAAAAVGQ LQDKLDKQVR
VDLPGGSLII NWEGEGKPLW MTGPAEHVYD GQIQL
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