| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0444 |
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| Symbol | |
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| ID | 4278142 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 508622 |
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| End bp | 509866 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638133202 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_749144 |
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| Protein GI | 114561631 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.249159 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGATTACT TTTCATATCA AAATAATTCA CTATTCGCAG AAGACTGCGA TGTAGCAAAA
CTGGCCAAAA CTCACGGTAC GCCGCTGTAC ATTTATTCTC GTGCCACATT AGAGCGCCAT
TGGCATGCCT TTAATAATGC CGTTGCTGAT CATCCGCATC TTATTTGTTA TGCAGTGAAG
GCGAATTCAA ACCTTGCGGT ATTAAATGTA TTGGCTCGCT TAGGCAGTGG CTTTGATATT
GTGTCTGGCG GTGAACTCTC ACGTGTGCTG CAAGCTGGCG GCGATCCTAA AAAAGTGGTT
TTCTCTGGTG TGGGCAAAAC CGTTGCCGAA ATGGAGCAAG CTCTTAATAT TGGCATTTAC
TGTTTTAATG TCGAGTCAAG TGCCGAACTT GAACAGCTTA ATGAGGTCGC GAGCCGCTTA
GGTAAAGTGG CACCTGTTTC ATTGCGAATT AATCCAGATG TTGATGCCGG TACTCATCCT
TATATTTCGA CGGGCCTTAA AGAAAATAAA TTTGGTATCG CCATGGAAGA AGCTGAAGTG
GTTTTTGCCC GTGCAGCAGA ATTAGCTCAT TTACATGTTA AGGGTGTGGA TTGCCATATT
GGTTCACAGC TCACCGAAAT AAAGCCATTC TTAGATGCCA TGGATCGCAT GCTTGCATTG
ATCGATCGTT TAGGCGAACA AGGTATCCAA ATTGAACACT TTGATGTGGG TGGCGGCTTA
GGGGTAACAT ATAACAGTGA AACTCCACCA CATCCAGACG CATATGCCGC TGCATTACTC
GAGCGCTTAA ATGGTCGTAA ATTGAAGTTA ATTTTTGAAC CTGGCCGTGC TATAGCCGCC
AATGCGGGTA TTTTTGTCAC TCAAGTACTT TATCTGAAAG AAAACAGCGA TAAGCGTTTT
GCGATTGTTG ATGGTGCAAT GAATGATCTT ATTCGTCCGT CGCTTTATAG CGCATGGCAA
AATATTATTC CGGTACAACA AAATGATGCG CCAACTTTTG CTTATGATAT TGTAGGCCCA
GTATGCGAAA CGGGTGACTT TTTGGGAAAA GACAGACAGT TAGCGGTAAA GTCGGGTGAC
TTATTAGCGA TACGTTCAAG TGGCGCTTAT GGTTTTGCTA TGGCCTCAAA TTATAATTCT
CGCCCAAGAG TGGCTGAAAT TATGGTTGAT GGTGGTAATG ATTTTGTTGT TCGTCAGCGT
GAAACGCTAG AACAACTTTG GCAAGGCGAA CATTTACTGC CATAG
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| Protein sequence | MDYFSYQNNS LFAEDCDVAK LAKTHGTPLY IYSRATLERH WHAFNNAVAD HPHLICYAVK
ANSNLAVLNV LARLGSGFDI VSGGELSRVL QAGGDPKKVV FSGVGKTVAE MEQALNIGIY
CFNVESSAEL EQLNEVASRL GKVAPVSLRI NPDVDAGTHP YISTGLKENK FGIAMEEAEV
VFARAAELAH LHVKGVDCHI GSQLTEIKPF LDAMDRMLAL IDRLGEQGIQ IEHFDVGGGL
GVTYNSETPP HPDAYAAALL ERLNGRKLKL IFEPGRAIAA NAGIFVTQVL YLKENSDKRF
AIVDGAMNDL IRPSLYSAWQ NIIPVQQNDA PTFAYDIVGP VCETGDFLGK DRQLAVKSGD
LLAIRSSGAY GFAMASNYNS RPRVAEIMVD GGNDFVVRQR ETLEQLWQGE HLLP
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